PhD Thesis - Computational RNA Biology

Trincado JL. Characterization of clinically relevant RNA alterations for personalized cancer medicine. Universitat Pompeu Fabra. January 28th, 2019. Thesis Director: Eyras E. 

2019

Original articles in indexed journals - Evolutionary Genomics

Ruiz-Orera J, Alba MM. Frequent translation of small open reading frames in evolutionary conserved lncRNA regions. bioRxiv, 2018. DOI: https://doi.org/10.1101/348326.

2018

Original articles in indexed journals - Integrative Biomedical Informatics

Speck-Planche A. Combining Ensemble Learning with a Fragment-Based Topological Approach To Generate New Molecular Diversity in Drug Discovery: In Silico Design of Hsp90 Inhibitors. ACS Omega, 2018; 3(11): 14704- 14716. PMID: 30555986 . DOI: 10.1021/acsomega.8b02419.

2018

Original articles in indexed journals - Evolutionary Genomics

Blevins WR, Tavella T, Moro SG, Blasco-Moreno B, Closa-Mosquera A, Diez J, Carey LB, Alba MM. Using ribosome profiling to quantify differences in protein expression: a case study in Saccharomyces cerevisiae oxidative stress conditions. bioRxiv, 2018 DOI: 10.1101/501478.

2018

Original articles in indexed journals - Evolutionary Genomics

Ruiz-Orera J, Alba MM. Translation of Small Open Reading Frames: Roles in Regulation and Evolutionary Innovation. Trends Genet, 2018; 35(3): 186-198. PMID: 30606460 . DOI: 10.1016/j.tig.2018.12.003.

2018

Original articles in indexed journals - Computational Science

Jiménez Luna J, Sabbadin D, Cuzzolin A, Martínez-Rosell G, Gora J, Manchester J, Duca JS, De Fabritiis G. PathwayMap: Molecular pathway association with self-normalizing neural networks. J Chem Inf Model, 2018; 59(3): 1172-1181. PMID: 30586501 . DOI:  10.1021/acs.jcim.8b00711.

2018

Original articles in indexed journals - Integrative Biomedical Informatics

Souza T, Trairatphisan P, Piñero J, Furlong LI, Saez-Rodriguez J, Kleinjans J, Jennen D. Embracing the Dark Side: Computational Approaches to Unveil the Functionality of Genes Lacking Biological Annotation in Drug-Induced Liver Injury. Front Genet, 2018; 9:527 . PMID: 30515189 . DOI: 10.3389/ fgene. 2018.00527.

2018

Original articles in indexed journals - Integrative Biomedical Informatics

Speck-Planche A, Scotti MT. BET bromodomain inhibitors: fragment-based in silico design using multi-target QSAR models. Mol Divers, 2018; 23(3): 555-572. PMID: 30421269 . DOI: 10.1007/s11030-018-9890-8.

2018

Original articles in indexed journals - Systems Pharmacology

Antolín AA, Mestres J. Dual Inhibitors of PARPs and ROCKs. ACS Omega, 2018; 3 (10): 12707-12712. PMID: 30411017 . DOI: 10.1021/acsomega.8b02337.

2018

Original articles in indexed journals - Integrative Biomedical Informatics - PharmacoInformatics

Pastor M, Quintana J, Sanz F. Development of an Infrastructure for the Prediction of Biological Endpoints in Industrial Environments. Lessons Learned at the eTOX Project. Front Pharmacol, 2018; 9: 1147. PMID: 30364191 . DOI: 10.3389/fphar.2018.01147.

2018