Original articles in indexed journals - Computational Science

Skalic M, Varela-Rial A, Jiménez J, Martínez-Rosell G, De Fabritiis G. LigVoxel: Inpainting binding pockets using 3D-convolutional neural networks Bioinformatics, bty583. 2018 . PMID: 29982392 . DOI: 10.1093/bioinformatics/bty667.

2018

Original articles in indexed journals - PharmacoInformatics

Radchenko T, Brink A, Siegrist Y, Kochansky C, Bateman A, Fontaine F, Morettoni L, Zamora I. Correction: Software-aided approach to investigate peptide structure and metabolic susceptibility of amide bonds in peptide drugs based on high resolution mass spectrometry. PLoS One, 2018; 13 (7): e0200772 . PMID: 29995925 . DOI: 10.1371/journal.pone.0200772.

2018

Original articles in indexed journals - Integrative Biomedical Informatics - Structural Bioinformatics

Aguirre-Plans J, Piñero J, Menche J, Sanz F, Furlong LI, Schmidt HHHW, Oliva B, Guney E. Proximal Pathway Enrichment Analysis for Targeting Comorbid Diseases via Network Endopharmacology. Pharmaceuticals, 2018; 11(3): E61.. PMID: 29932108 . DOI: 10.3390/ph11030061.

2018

Book chapters - Integrative Biomedical Informatics - PharmacoInformatics

López-Massaguer O, Pastor M, Sanz F, Carbonell P. Hepatotoxicity Prediction by Systems Biology Modeling of Disturbed Metabolic Pathways Using Gene Expression Data. Methods Mol Biol, 2018; 1800: 505-518. PMID: 29934908 . DOI: 10.1007/978-1-4939-7899-1_23..

2018

Original articles in indexed journals - GPCR Drug Discovery

Rodríguez-Espigares I, Giorgino T, Primdahl KG, Vik A, Stenstrøm Y, Selent J, Hansen TV. Synthesis, molecular modelling studies and biological evaluation of new oxoeicosanoid receptor 1 agonists. Bioorgan Med Chem, 2018; pii: S0968-0896(18)30256-6. PMID: 29866479 . DOI: 10.1016/j.bmc.2018.05.036.

2018

Original articles in indexed journals - Integrative Biomedical Informatics - Structural Bioinformatics

Cuadrado A, Manda G, Hassan A, Alcaraz MJ, Barbas C, Daiber A, Ghezzi P, León R, López MG, Oliva B, Pajares M, Rojo AI, Robledinos-Antón N, Valverde AM, Guney E, Schmidt HHHW. Transcription Factor NRF2 as a Therapeutic Target for Chronic Diseases: A Systems Medicine Approach. Pharmacol Rev, 2018; 70(2): 348-383. PMID: 29507103 . DOI: 10.1124/pr.117.014753.

2018

Original articles in indexed journals - Computational RNA Biology

Jayasinghe RG, Cao S, Gao O, Wendl MC, Vo NS, Reynolds SM, Zhao Y, Climente-González H, Chai S, Wang F, Varghese R, Huang M, Liang WW, Wyczalkowski MA, Sengupta S, Li Z, Payne SH, Fenyö D, Miner JH, Walter MJ. The Cancer Genome Atlas Research Network, Vincent B, Eyras E, Chen K, Shmulevich I, Chen F, Ding L. Systematic Analysis of Splice-Site-Creating Mutations in Cancer. Cell Rep, 2018; 23(1): 270-281.e3. PMID: 29617666 . DOI: 10.1016/j.celrep.2018.03.052.

2018

PhD Thesis - GPCR Drug Discovery

Rodríguez Espigares, I. GPCRmd - A web platform for collection, visualization and analysis of molecular dynamics data for G protein-coupled receptors. Universitat Pompeu Fabra.  April 4th, 2018. Thesis Directors: Sanz F and Selent J.

2018

Original articles in indexed journals - Functional Genomics

Puigdevall P, Castelo R. GenomicScores: seamless access to genomewide position-specific scores from R and Bioconductor. Bioinformatics, 2018; bty311. PMID: 29718111 . DOI: 10.1093/bioinformatics/bty311.

2018

Original articles in indexed journals - Integrative Biomedical Informatics

Gutiérrez-Sacristán A, Bravo A, Giannoula A, Mayer MA, Sanz F, Furlong LI. comoRbidity: An R package for the systematic analysis of disease comorbidities. Bioinformatics, 2018; bty315 DOI: 10.1093/ bioinformatics/ bty315.

2018