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Original articles in indexed journals - Computational RNA Biology

Llorian M, Gooding C, Bellora N, Hallegger M, Buckroyd A, Wang X, Rajgor D, Kayikci M, Feltham J, Ule J, Eyras E, Smith CWJ. The alternative splicing program of differentiated smooth muscle cells involves concerted non-productive splicing of post-transcriptional regulators. Nucleic Acids Res, 2016; 44 (18): 8933-8950 . PMID: 27317697 . DOI: 10.1093/nar/gkw560 OCT 14 2016.

2016

Original articles in indexed journals - Structural Bioinformatics

Guivernau B, Bonet J, Valls-Comamala V, Bosch-Morato M, Godoy JA, Inestrosa NC, Peralvarez-Marin A, Fernandez-Busquets X, Andreu D, Oliva B, Munoz FJ. Amyloid-beta Peptide Nitrotyrosination Stabilizes Oligomers and Enhances NMDAR-Mediated Toxicity. J Neurosci, 2016; 36 (46): 11693-11703 . PMID: 27852777 . DOI: 10.1523/JNEUROSCI.1081-16.2016 NOV 16 2016.

2016

PhD Thesis - Integrative Biomedical Informatics

Bravo A. BeFree: a text mining system for the extraction of biomedical information from the literature. Universitat Pompeu Fabra. November, 28th 2016. Thesis Director: Furlong LI.

2016

Original articles in indexed journals - Computational RNA Biology

Martin S, Bellora N, Gonzalez-Vallinas J, Irimia M, Chebli K, de Toledo M,  Raabe M, Eyras E, Urlaub H, Blencowe B, Tazi J. Preferential binding of a stable G3BP ribonucleoprotein complex to intron-retaining transcripts in mouse brain and modulation of their expression in the cerebellum. J Neurochem, 139 (3): 349-368 . PMID: 27513819 . DOI: 10.1111/jnc.13768 NOV 2016.

2016

Original articles in indexed journals - Computational RNA Biology

Pérez-Guijarro E, Karras P, Cifdaloz M, Martínez-Herranz R, Cañón E, Graña O, Horcajada-Reales C, Alonso-Curbelo D, Calvo TG, Gómez-López G, Bellora N, Riveiro-Falkenbach E, Ortiz-Romero PL, Rodríguez-Peralto JL, Maestre L, Roncador G, de Agustín Asensio JC, Goding CR, Eyras E, Megías D, Méndez R, Soengas MS. Lineage-specific roles of the cytoplasmic polyadenylation factor CPEB4 in the regulation of melanoma drivers. Nat Commun. 2016 Nov 18;7:13418 . PMID: 27857118 . DOI: 10.1038/ncomms13418.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Al-Shorbaji N, Bellazzi R, de Quiros FGB, Kochs S, Kulikowski CA, Lovell NH, Maojo V, Park HA, Sanz F, Sarkar IN, Tanaka H. Discussion of "The New Role of Biomedical informatics in the Age of Digital Medicine". Methods Inf Med, 55 (5): 403-421 . PMID: 27524112 . DOI: 10.3414/ME15-12-0005 2016.

2016

Reviews in indexed journals - Systems Pharmacology - Computational Biophysics

Ferruz N, Harvey MJ, Mestres J, De Fabritiis G. Insights from Fragment Hit Binding Assays by Molecular Simulations (vol 55, pg 2200, 2015). J Chem Inf Model, 2016; 56 (10):2123-2123 . PMID: 26376295 . DOI: 10.1021/acs.jcim.6b00557 OCT 2016.

2016

Reviews in indexed journals - Systems Pharmacology - Computational Biophysics

Ferruz N, Harvey MJ, Mestres J, De Fabritiis G. Insights from Fragment Hit Binding Assays by Molecular Simulations (vol 55, pg 2200, 2015). J Chem Inf Model, 2016; 56 (10):2123-2123 . PMID: 26376295 . DOI: 10.1021/acs.jcim.6b00557 OCT 2016.

2016

Original articles in indexed journals - Computational RNA Biology

García-Martín JA, Bayegan AH, Dotu I, Clote P. RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory. BMC Bioinformatics, 2016; 17(1): 424 . PMID: 27756204 .

2016

Original articles in indexed journals - Computational RNA Biology

Rodor J, FitzPatrick DR, Eyras E, Cáceres JF. The RNA-binding landscape of RBM10 and its role in alternative splicing regulation in models of mouse early development. RNA Biol, 2016; 14 (1): 45-57 . PMID: 27763814 . DOI: 10.1080/15476286.2016.1247148 2017.

2016



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