PhD Thesis - Structural Bioinformatics

Marin-Lopez MA. On the development of computational tools for the study of protein-protein interactions and protein-protein binding. Universitat Pompeu Fabra, January, 13  2017. Thesis Director: Oliva B.

2017

Original articles in indexed journals - Integrative Biomedical Informatics

Gutiérrez-Sacristán A, Bravo A, Portero-Tresserra M, Valverde O, Armario A, Blanco-Gandía MC, Farré A, Fernández-Ibarrondo L, Fonseca F, Giraldo J, Leis A, Mané A, Mayer MA, Montagud-Romero S, Nadal R, Ortiz J, Pavon FJ, Perez EJ, Rodríguez-Arias M, Serrano A, Torrens M, Warnault V, Sanz F, Furlong LI. Text mining and expert curation to develop a database on psychiatric diseases and their genes. Database (Oxford), 2017; 2017: bax043.. PMID: 29220439 . DOI: 10.1093/database/bax043.

2017

Original articles in indexed journals - GPCR Drug Discovery

Rodríguez-Espigares I, Kaczor AA, Stepniewski TM, Selent J. Challenges and Opportunities in Drug Discovery of Biased Ligands. Methods Mol Biol, 2017; 1705: 321-334 . PMID: 29188569 . DOI: 10.1007/978-1-4939-7465-8_14.

2017

Original articles in indexed journals - Computational Science

Martínez-Rosell G, Giorgino T, De Fabritiis G. PlayMolecule ProteinPrepare: A Web Application for Protein Preparation for Molecular Dynamics Simulations. J Chem Inf Model, 2017; 57 (7): 1511–1516. PMID: 28594549 . DOI: 10.1021/acs.jcim.7b00190.

2017

Original articles in indexed journals - Computational RNA Biology

Llorian M, Gooding C, Bellora N, Hallegger M, Buckroyd A, Wang X, Rajgor D, Kayikci M, Feltham J, Ule J, Eyras E, Smith CWJ. The alternative splicing program of differentiated smooth muscle cells involves concerted non-productive splicing of post-transcriptional regulators. Nucleic Acids Res, 2016; 44 (18): 8933-8950 . PMID: 27317697 . DOI: 10.1093/nar/gkw560 OCT 14 2016.

2016

Original articles in indexed journals - Evolutionary Genomics

Abascal F, Corvelo A, Cruz F, Villanueva-Cañas JL, Vlasova A, Marcet-Houben M, Martínez-Cruz B, Cheng JY, Prieto P, Quesada V, Quilez J, Li G10, García F, Rubio-Camarillo M, Frias L, Ribeca P, Capella-Gutiérrez S, Rodríguez JM, Câmara F, Lowy E, Cozzuto L, Erb I, Tress ML, Rodriguez-Ales JL, Ruiz-Orera J, Reverter F, Casas-Marce M, Soriano L, Arango JR, Derdak S, Galán B, Blanc J, Gut M, Lorente-Galdos B, Andrés-Nieto M, López-Otín C, Valencia A, Gut I, García JL, Guigó R, Murphy WJ, Ruiz-Herrera A, Marques-Bonet T, Roma G, Notredame C, Mailund T, Alba MM, Gabaldón T, Alioto T, Godoy JA. Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx. Genome Biol, 2016; 14; 17(1): 251 . PMID: 27964752 . DOI: 10.1186/s13059-016-1090-1.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Roberto G, Leal I, Sattar N, Stewart R, Garcia-Gil M, Avillach P, Egger P, van Wijngaarden R, Ansell D, Reisberg S, Pasqua A, Pedersen L, Tramontan L, Mayer MA, Duarte T, Herings R, Coloma P, Lapi F, Sturkenboom M, van der Lei J, Schuemie M, Rijnbeek P, Gini R. Standardizing Diversity of Event Definitions in Federated Networks of Heterogeneous Health Data Sources: The "Component Algorithm Strategy". Pharmacoepidem DR S, 2016; 25: 165-166; S3

2016

Original articles in indexed journals - Structural Bioinformatics

Wright RHG, Fernandez-Fuentes N, Oliva B, Beato M. Insight into the machinery that oils chromatin dynamics. NUCLEUS, 7 (6): 532-539 DOI: 10.1080/19491034.2016.1255392 2016.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Al-Shorbaji N, Bellazzi R, de Quiros FGB, Kochs S, Kulikowski CA, Lovell NH, Maojo V, Park HA, Sanz F, Sarkar IN, Tanaka H. Discussion of "The New Role of Biomedical informatics in the Age of Digital Medicine". Methods Inf Med, 55 (5): 403-421 . PMID: 27524112 . DOI: 10.3414/ME15-12-0005 2016.

2016

Original articles in indexed journals - Computational RNA Biology

Pérez-Guijarro E, Karras P, Cifdaloz M, Martínez-Herranz R, Cañón E, Graña O, Horcajada-Reales C, Alonso-Curbelo D, Calvo TG, Gómez-López G, Bellora N, Riveiro-Falkenbach E, Ortiz-Romero PL, Rodríguez-Peralto JL, Maestre L, Roncador G, de Agustín Asensio JC, Goding CR, Eyras E, Megías D, Méndez R, Soengas MS. Lineage-specific roles of the cytoplasmic polyadenylation factor CPEB4 in the regulation of melanoma drivers. Nat Commun, 2016; 7: 13418. PMID: 27857118 . DOI: 10.1038/ncomms13418.

2016