PhD Thesis - Computational Biochemistry

Drechsel, Nils Jan Daniel. Development of a multiscale protocol for the study of energetic of protein dynamics. Universitat Pompeu Fabra. October 31st, 2013. Thesis Directors: Villà-Freixa J and Dill K.

2013

Original articles in indexed journals - Computational Genomics - group

Tamborero D, Gonzalez-Perez A, Lopez-Bigas N. OncodriveCLUST: exploiting the positional clustering of somatic mutations to identify cancer genes. Bioinformatics, 2013; 29 (18): 2238-44 . PMID: 23884480 . DOI: 10.1093/bioinformatics/btt395.

2013

Original articles in indexed journals - Structural Bioinformatics

Rivera-Hernández G, Marin-Argany M, Blasco-Moreno B, Bonet J, Oliva B, Villegas S. Elongation of the C-terminal domain of an anti-amyloid single-chain variable fragment increases its thermodynamic stability and decreases its aggregation tendency. MAbs, 2013; 5(5): 678-689. PMID: 23924802 . DOI: 10.4161/mabs.25382 SEP 1 2013.

2013

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Heras SR, Macías S, Plass M, Fernández N, Cano D, Eyras E, García-Pérez JL, Cáceres JF. The Microprocessor controls the activity of mammalian retrotransposons. Nat Struct Mol Biol, 2013; 20(10): 1173-81 . PMID: 23995758 . DOI: 10.1038/nsmb.2658.

2013

Original articles in indexed journals - Computational Genomics - group

Cancer Genome Atlas Research Network (including Lopez-Bigas N, González-Pérez A, Tamborero D), Weinstein JN, Collison EA, Mills GB, Shaw KM, Ozenberger BA, Ellrot K, Shmulevich I, Sander C, Stuart JM. The Cancer Genome Atlas Pan-Cancer Analysis Project. Nat Genet, 2013; 45: 1113–1120. PMID: 24071849 . DOI: 10.1038/ng.2764.

2013

Original articles in indexed journals - Computational Genomics - group

Gonzalez-Perez A, Jene-Sanz A, Lopez-Bigas N. The mutational landscape of chromatin regulatory factors across 4623 tumor samples. Genome Biol, 2013; 14(9):r106 . PMID: 24063517 . DOI: 10.1186/gb-2013-14-9-r106.

2013

Original articles in indexed journals - Computational Genomics - group

Tamborero D, Gonzalez-Perez A, Perez-Llamas C, Deu-Pons J, Kandoth C, Reimand J, Lawrence MS, Getz G, Bader GD, Ding L, Lopez-Bigas N. Comprehensive identification of mutational cancer driver genes across 12 tumor types. Sci Rep, 2013; 3 . PMID: 24084849 . DOI: 10.1038/srep02650.

2013

PhD Thesis - Systems Pharmacology

Jalencas X. Chemoisosterism and its impact on drug polypharmacology. Universitat Pompeu Fabra. September, 17th 2013. Thesis Director: Mestres J.

2013

PhD Thesis - Computational RNA Biology - Computational Genomics - group

González-Vallinas JR. Software development and analysis of High Throughput Sequencing data for genomic enhancer prediction. Universitat Pompeu Fabra. September 9th. 2013. Thesis Director: López-Bigas, N and Eyras E.

2013

Original articles in indexed journals - Systems Pharmacology

Antolin AA, Carotti A, Nuti R, Hakkaya A, Camaioni E, Mestres J, Pellicciari R, Macchiarulo A. Exploring the effect of PARP-1 flexibility in docking studies. J Mol Graph Model, 2013; 45: 192-201. PMID: 24056306 . DOI: 10.1016/j.jmgm.2013.08.006.

2013