PhD Thesis - Computational RNA Biology - Computational Genomics - group

Agirre, E. Epigenetics in alternative splicing: links between chromatin structure, transcription and non-coding RNA mediated regulation. Universitat Pompeu Fabra, June 2013. Director: Eyras E.

2013

Original articles in indexed journals - Integrative Biomedical Informatics - Systems Pharmacology

Oliveira JL, Lopes P, Nunes T, Campos D, Boyer S, Ahlberg E, van Mulligen EM, Kors JA, Singh B, Furlong LI, Sanz F, Bauer-Mehren A, Carrascosa MC, Mestres J, Avillach P, Diallo G, Díaz Acedo C, van der Lei J. The EU-ADR Web Platform: delivering advanced pharmacovigilance tools. Pharmacoepidemiol Drug Saf, 2013; 22 (5): 459-467. PMID: 23208789 . DOI: 10.1002/pds.3375.

2013

Original articles in indexed journals - Structural Bioinformatics

Martínez-Høyer S, Aranguren-Ibáñez A, García-García J, Serrano-Candelas E, Vilardell J, Nunes V, Aguado F, Oliva B, Itarte E, Pérez-Riba M. Protein kinase CK2-dependent phosphorylation of the human Regulators of Calcineurin reveals a novel mechanism regulating the calcineurin-NFATc signaling pathway. Biochim Biophys Acta, 2013; 1833 (10):2311-2321 . PMID: 23732701 . DOI: 10.1016/j.bbamcr.2013.05.021.

2013

Original articles in indexed journals - Systems Pharmacology - PharmacoInformatics

Azzaoui K, Jacoby E, Senger S, Rodríguez EC, Loza M, Zdrazil B, Pinto M, Williams AJ, de la Torre V, Mestres J, Pastor M, Taboureau O, Rarey M, Chichester C, Petiffer S, Blomberg N, Harland L, Williams-Jones B, Ecker GF. Scientific competency questions as the basis for semantically enriched open pharmacological space development. Drug Discov Today, 2013; 18: 843-852 . PMID: 23702085 . DOI: 10.1016/j.drudis.2013.05.008 SEP 2013.

2013

Original articles in indexed journals - Computational Genomics - group

Barneda-Zahonero B. Roman-Gonzalez L, Collazo O, Rafati H, Islam AMMK, Bussmann LH, di Tullio A, De Andres L, Graf T, Lopez-Bigas N, Mahmoudi T, Parra M. HDAC7 Is a Repressor of Myeloid Genes Whose Downregulation Is Required for Transdifferentiation of Pre-B Cells into Macrophages. Plos Genetics, 9 (5):e1003503. PMID: 23696748 . DOI: 10.1371/journal.pgen.1003503.

2013

Original articles in indexed journals - NeuroGenomics

Prado-Martínez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdós B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernández-Rodríguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernández-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Melé M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilson C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE*, Marquès-Bonet T*. Great ape genetic diversity and population history. Nature, 2013; 499(7459): 471-475. PMID: 23823723 . DOI: 10.1038/nature12228.

2013

Original articles in indexed journals - Structural Bioinformatics

Planas-Iglesias J, Bonet J, García-García J, Marín-López MA, Feliu E, Oliva B. Understanding protein-protein interactions using local structural features. J Mol Biol, 2013; 425 (7):1210-1224. PMID: 23353828 . DOI: 10.1016/j.jmb.2013.01.014.

2013

Original articles in indexed journals - Structural Bioinformatics

Santana-Codina N, Carretero R, Sanz-Pamplona R, Cabrera T, Guney E, Oliva B, Clezardin P, Olarte OE, Loza-Alvarez P, Méndez-Lucas A, Perales JC, Sierra A. A transcriptome-proteome integrated network identifies ERp57 as a hub that mediates bone metastasis. Mol Cell Proteomics, 2013; 12(8): 2111-2125. PMID: 23625662 . DOI: 10.1074/mcp.M112.022772.

2013

PhD Thesis - Evolutionary Genomics

Radó i Trilla, N. Low-complexity regions in proteins as a source of evolutionary innovation. University Pompeu Fabra, April 2013. Director: Alba MM.

2013

PhD Thesis - Computational Genomics - group

Jene, A. Integrative study of the regulatory and epigenomic programs involved in cancer development. University Pompeu Fabra. Director: Lopez-Bigas, N.  April, 2013.

2013