Original articles in indexed journals - Integrative Biomedical Informatics

Roberto G, Leal I, Sattar N, Stewart R, Garcia-Gil M, Avillach P, Egger P, van Wijngaarden R, Ansell D, Reisberg S, Pasqua A, Pedersen L, Tramontan L, Mayer MA, Duarte T, Herings R, Coloma P, Lapi F, Sturkenboom M, van der Lei J, Schuemie M, Rijnbeek P, Gini R. Standardizing Diversity of Event Definitions in Federated Networks of Heterogeneous Health Data Sources: The "Component Algorithm Strategy". Pharmacoepidem DR S, 2016; 25: 165-166; S3

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Al-Shorbaji N, Bellazzi R, de Quiros FGB, Kochs S, Kulikowski CA, Lovell NH, Maojo V, Park HA, Sanz F, Sarkar IN, Tanaka H. Discussion of "The New Role of Biomedical informatics in the Age of Digital Medicine". Methods Inf Med, 55 (5): 403-421 . PMID: 27524112 . DOI: 10.3414/ME15-12-0005 2016.

2016

PhD Thesis - Integrative Biomedical Informatics

Bravo A. BeFree: a text mining system for the extraction of biomedical information from the literature. Universitat Pompeu Fabra. November, 28th 2016. Thesis Director: Furlong LI.

2016

Original articles in indexed journals - Integrative Biomedical Informatics - PharmacoInformatics

Carbonell P, Lopez O, Amberg A, Pastor M, Sanz F. Hepatotoxicity prediction by systems biology modeling of disturbed metabolic pathways using gene expression data. ALTEX, 2016; 34 (2): 219-234 . PMID: 27690270 . DOI: 10.14573/altex.1602071.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Queralt-Rosinach N, Kuhn T, Chichester C, Dumontier M, Sanz F, Furlong LI. Publishing DisGeNET as nanopublications. Semantic Web, 7 (5): 519-528 DOI: 10.3233/SW-150189 2016.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Roberto G, Leal I, Sattar N, Loomis AK, Avillach P, Egger P, van Wijngaarden R, Ansell D, Reisberg S, Tammesoo ML, Alavere H, Pasqua A, Pedersen L, Cunningham J, Tramontan L, Mayer MA, Herings R, Coloma P, Lapi F, Sturkenboom M, van der Lei J, Schuemie MJ, Rijnbeek P, Gini R. Identifying Cases of Type 2 Diabetes in Heterogeneous Data Sources: Strategy from the EMIF Project. PLoS ONE 2016; 11(8): e0160648 . PMID: 27580049 . DOI: 10.1371/journal.pone.0160648.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Queralt-Rosinach N, Piñero J, Bravo A, Sanz F, Furlong LI. DisGeNET-RDF: Harnessing the Innovative Power of the Semantic Web to Explore the Genetic Basis of Diseases. Bioinformatics, 2016; 32(14): 2236-8 . PMID: 27153650 . DOI: 10.1093/bioinformatics/btw214.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Digles D, Zdrazil B, Neefs JM, Van Vlijmen H, Herhaus C, Caracoti A. Brea J, Roibas B, Loza MI, Queralt-Rosinach N, Furlong LI, Gaulton A, Bartek L, Senger S, Chichester C, Engkvist O, Evelo CT, Franklin NI, Marren D, Ecker GF, Jacoby E. Open PHACTS computational protocols for in silico target validation of cellular phenotypic screens: knowing the knowns. MEDCHEMCOMM, 7 (6): 1237-1244 DOI: 10.1039/c6md00065g 2016.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Bravo A, Li TS, Su AI, Good BM, Furlong LI. Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text. Database (Oxford) 2016 . PMID: 27307137 . DOI: 10.1093/database/baw094.

2016

Original articles in indexed journals - Integrative Biomedical Informatics

Li TS, Bravo A, Furlong LI, Good BM, Su AI. A crowdsourcing workflow for extracting chemical-induced disease relations from free text. Database (Oxford), 2016; 1-11: baw051  DOI: 10.1093/database/baw051.

2016