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Original articles in indexed journals - Computational RNA Biology

Rodor J, Pan Q, Blencowe BJ, Eyras E, Cáceres JF. The RNA-binding profile of Acinus, a peripheral component of the exon junction complex, reveals its role in splicing regulation. RNA, 2016; 22 (9): 1411-1426 . PMID: 27365209 . DOI: 10.1261/rna.057158.116.

2016

Original articles in indexed journals - Computational RNA Biology

Pages A, Dotu I, Guigo R, Eyras E. The discovery potential of RNA processing profiles. bioRxiv, 2016. DOI: 10.1101/049809.

2016

Original articles in indexed journals - Computational RNA Biology

Sebestyen E, Singh B, Miñana B, Pages A, Mateo F, Pujana MA, Valcarcel J, Eyras E. Large-scale analysis of genome and transcriptome alterations in multiple tumors unveils novel cancer-relevant splicing networks. Genome Research, 2016; 26 (6): 732-744 . PMID: 27197215 . DOI: 10.1101/ gr. 199935. 115.

2016

Original articles in indexed journals - Computational RNA Biology

Falaleeva M, Pages A, Matuszek Z, Hidmi S, Agranat-Tamir L, Korotkov K, Nevo Y, Eyras E, Sperling R, Stamm S. Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing. Proc Natl Acad Sci U S A, 2016; 113 (12):E1625-E1634 . PMID: 26957605 . DOI: 10.1073/pnas.1519292113 MAR 22 2016.

2016

PhD Thesis - Computational RNA Biology

Pérez Llamas, Christian. Computational approaches for integrative cancer genomics. Universitat Pompeu Fabra. December, 18th 2015. Thesis Director: López Bigas, Núria

2015

Original articles in indexed journals - Computational RNA Biology

Zhang RX, Calixto CPG, Tzioutziou NA, James AB, Simpson CG, Guo WB, Marquez Y, Kalyna M, Patro R, Eyras E, Barta A, Nimmo HG, Brown JWS. AtRTD - a comprehensive reference transcript dataset resource foraccurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phitol, 2015; 208 (1): 96-101. PMID: 26111100 . DOI: 10.1111/nph.13545.

2015

PhD Thesis - Computational RNA Biology

Kremsky IJ. Assessing the relationship between chromatin and splicing factors in alternative splicing. Universitat Pompeu Fabra. July 14th 2015. Thesis Director: Eyras E.

2015

Original articles in indexed journals - Computational RNA Biology

Gonzalez-Vallinas J, Pages A, Singh B, Eyras E. A semi-supervised approach uncovers thousands of intragenic enhancers differentially activated in human cells. BMC Genomics, 2015; 16. PMID: 26169177 . DOI: 10.1186/s12864-015-1704-0.

2015

Original articles in indexed journals - Computational RNA Biology

Kremsky I, Bellora N, Eyras E. A Quantitative Profiling Tool for Diverse Genomic Data Types Reveals Potential Associations between Chromatin and Pre-mRNA Processing. PLoS One, 2015; 10(7): e0132448. PMID: 26207626 . DOI: 10.1371/journal.pone.0132448. eCollection 2015.

2015

Original articles in indexed journals - Computational RNA Biology

Alamancos GP, Pagès A, Trincado JL, Bellora N, Eyras E. Leveraging transcript quantification for fast computation of alternative splicing profiles. RNA, 2015; 21 (9): 1521-1531
. PMID: 26179515 . DOI: 10.1261/rna.051557.115 SEP 2015.

2015



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