Original articles in indexed journals - Computational Genomics - group

Gonzalez-Perez A, Jene-Sanz A, Lopez-Bigas N. The mutational landscape of chromatin regulatory factors across 4623 tumor samples. Genome Biol, 2013; 14(9):r106 . PMID: 24063517 . DOI: 10.1186/gb-2013-14-9-r106.

2013

Original articles in indexed journals - Computational Genomics - group

Tamborero D, Gonzalez-Perez A, Perez-Llamas C, Deu-Pons J, Kandoth C, Reimand J, Lawrence MS, Getz G, Bader GD, Ding L, Lopez-Bigas N. Comprehensive identification of mutational cancer driver genes across 12 tumor types. Sci Rep, 2013; 3 . PMID: 24084849 . DOI: 10.1038/srep02650.

2013

PhD Thesis - Computational RNA Biology - Computational Genomics - group

González-Vallinas JR. Software development and analysis of High Throughput Sequencing data for genomic enhancer prediction. Universitat Pompeu Fabra. September 9th. 2013. Thesis Director: López-Bigas, N and Eyras E.

2013

Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Mulero MC, Ferres-Marco D, Islam A, Margalef P, Pecoraro M, Toll A, Drechsel N, Charneco C, Davis S, Bellora N, Gallardo F, López-Arribillaga E, Asensio-Juan E, Rodilla V, González J, Iglesias M, Shih V, Alba M, Di Croce L, Hoffmann A, Miyamoto S, Villà-Freixa J, Lopez-Bigas N, Keyes WM, Domínguez M, Bigas A, Espinosa L. Chromatin-Bound IkBa Regulates a Subset of Polycomb Target Genes in Differentiation and Cancer. Cancer Cell, 2013; 24 (2): 151-166. PMID: 23850221 . DOI: 10.1016/j.ccr.2013.06.003.

2013

Original articles in indexed journals - Computational Genomics - group

Jene-Sanz A, Renta V, Vilkova AV, Khramtsova GF, Khramtsov AI, Olopade OI, Lopez-Bigas N, Benevolenskaya EV. Expression of Polycomb targets predicts breast cancer prognosis. Mol Cell Biol, 2013; 33 (19): 3951-3961. PMID: 23918806 . DOI: 10.1128/MCB.00426.

2013

Original articles in indexed journals - Integrative Biomedical Informatics

Cases M, Furlong LI, Albanell J, Altman RB, Bellazzi R, Boyer S, Brand A, Brookes AJ, Brunak S, Clark TW, Gea J, Ghazal P, Graf N, Guigo R, Klein TE, Lopez-Bigas N, Maojo V, Mons B, Musen M, Oliveira JL, Rowe A, Ruch P, Shabo A, Shortliffe EH, Valencia A, van der Lei J, Mayer MA, Sanz F. Improving data and knowledge management to better integrate health care and research. J Intern Med 2013; 274 (4): 321-8. PMID: 23808970 . DOI: 10.1111/joim.12105.

2013

Original articles in indexed journals - Computational Genomics - group

International Cancer Genome Consortium Mutation Pathways and Consequences Subgroup of the Bioinformatics Analyses Working Group, Gonzalez-Perez A, Mustonen V, Reva B, Ritchie GR, Creixell P, Karchin R, Vazquez M, Fink JL, Kassahn KS, Pearson JV, Bader GD, Boutros PC, Muthuswamy L, Ouellette BF, Reimand J, Linding R, Shibata T, Valencia A, Butler A, Dronov S, Flicek P, Shannon NB, Carter H, Ding L,Sander C, Stuart JM, Stein LD, Lopez-Bigas N. Computational approaches to identify functional genetic variants in cancer genomes. Nat Methods, 2013; 10 (8): 723-9. PMID: 23900255 . DOI: 10.1038/nmeth.2562.

2013

Original articles in indexed journals - Computational Genomics - group

Barneda-Zahonero B. Roman-Gonzalez L, Collazo O, Rafati H, Islam AMMK, Bussmann LH, di Tullio A, De Andres L, Graf T, Lopez-Bigas N, Mahmoudi T, Parra M. HDAC7 Is a Repressor of Myeloid Genes Whose Downregulation Is Required for Transdifferentiation of Pre-B Cells into Macrophages. Plos Genetics, 9 (5):e1003503. PMID: 23696748 . DOI: 10.1371/journal.pgen.1003503.

2013

PhD Thesis - Computational Genomics - group

Jene, A. Integrative study of the regulatory and epigenomic programs involved in cancer development. University Pompeu Fabra. Director: Lopez-Bigas, N.  April, 2013.

2013

Original articles in indexed journals - Computational Genomics - group

de la Rica L, Urquiza JM, Gómez-Cabrero D, Islam AB, Lopez-Bigas N, Tegnér J, Toes RE, Ballestar E. Identification of novel markers in rheumatoid arthritis through integrated analysis of DNA methylation and microRNA expression. J Autoimmun, 2013; 41 6-16 . PMID: 23306098 . DOI: 10.1016/j.jaut.2012.12.005.

2013