PhD Thesis - Computational Genomics - group

Jene, A. Integrative study of the regulatory and epigenomic programs involved in cancer development. University Pompeu Fabra. Director: Lopez-Bigas, N.  April, 2013.

2013

Original articles in indexed journals - Computational Genomics - group

de la Rica L, Urquiza JM, Gómez-Cabrero D, Islam AB, Lopez-Bigas N, Tegnér J, Toes RE, Ballestar E. Identification of novel markers in rheumatoid arthritis through integrated analysis of DNA methylation and microRNA expression. J Autoimmun, 2013; 41 6-16 . PMID: 23306098 . DOI: 10.1016/j.jaut.2012.12.005.

2013

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Zhang Z, Falaleeva M, Agranat-Tamir L, Pages A, Eyras E, Sperling J, Sperling R, Stamm S. The 5' untranslated region of the serotonin receptor 2C pre-mRNA generates miRNAs and is expressed in non-neuronal cells. Exp Brain Res, 2013; 230(4): 387-94 . PMID: 23494383 . DOI: 10.1007/s00221-013-3458-8..

2013

Original articles in indexed journals - Computational Genomics - group

Tamborero D, Lopez-Bigas N, Gonzalez-Perez A. Oncodrive-CIS: A Method to Reveal Likely Driver Genes Based on the Impact of Their Copy Number Changes on Expression. PLoS One, 2013; 8(2). PMID: 23408991 . DOI: 10.1371/journal.pone.0055489.

2013

Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Toll-Riera M, Alba MM. Emergence of novel domains in proteins. BMC Evol Biol, 2013;13(1):47. PMID: 23425224 . DOI: 13 10.1186/1471-2148-13-47.

2013

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Hänzelmann S, Castelo R, Guinney J. GSVA: gene set variation analysis for microarray and RNA-Seq data. BMC Bioinformatics, 2013; 16;14(1):7. PMID: 23323831 . DOI: 10.1186/1471-2105-14-7.

2013

Original articles in indexed journals - Computational Genomics - group

Hernando H, Shannon-Lowe C, Islam AB, Al-Shahrour F, Rodriguez-Ubreva J, Rodriguez-Cortez VC, Javierre BM, Mangas C, Fernandez AF, Parra M, Delecluse HJ, Esteller M, Lopez-Granados E, Fraga MF, Lopez-Bigas N, Ballestar E. The B cell transcription program mediates hypomethylation and overexpression of key genes in Epstein-Barr virus-associated proliferative conversion. Genome Biol, 2013; 14 (1): R3. PMID: 23320978 . DOI: 10.1186/gb-2013-14-1-r3.

2013

Original articles in indexed journals - Computational Genomics - group

Schroeder MP, Gonzalez-Perez A, Lopez-Bigas N. Visualizing multidimensional cancer genomics data. Genome Med, 2013; 31;5(1):9. PMID: 23363777 . DOI: 10.1186/gm413.

2013

Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Villanueva-Cañas JL, Laurie S, Alba MM. Improving genome-wide scans of positive selection by using protein isoforms of similar length. Genome Biol Evol, 2013; 5 (2): 457-467. PMID: 23377868 . DOI: 10.1093/gbe/evt017 2013.

2013

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Ballaré C, Castellano G, Gaveglia L, Althammer S, González-Vallinas J, Eyras E, Le Dily F, Zaurin R, Soronellas D, Vicent GP, Beato M. Nucleosome-Driven Transcription Factor Binding and Gene Regulation. Mol Cell, 2012; 49 (1):67-79. PMID: 23177737 . DOI: 10.1016/j.molcel.2012.10.019.

2012