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Original articles in indexed journals - Functional Genomics

Kannan L, Ramos M, Re A, El-Hachem N, Safikhani Z, Gendoo DMA, Davis S, Gomez-Cabrero D, Castelo R, Hansen KD, Carey VJ, Morgan M, Culhane AC, Haibe-Kains B, Waldron L. Public data and open source tools for multi-assay genomic investigation of disease. Brief Bioinform, 2016; 17 (4): 603-615; SI . PMID: 26463000 . DOI: 10.1093/bib/bbv080 JUL 2016.

2016

Original articles in indexed journals - Functional Genomics

Hänzelmann S, Wang J, Guney E, Tang Y, Zhang E, Axelsson AS, Nenonen H, Salehi A, Wollheim CB, Zetterberg E, Berntorp E, Costa IG, Castelo R, Rosengren A. Thrombin stimulates insulin secretion via protease-activated receptor-3. Islets, 2016; 7 (4) . PMID: 26742564 . DOI: 10.1080/19382014.2015.1118195.

2016

Original articles in indexed journals - Functional Genomics

Baumstark R, Hänzelmann S, Tsuru S, Schaerli Y, Francesconi M, Mancuso FM, Castelo R, Isalan M. The propagation of perturbations in rewired bacterial gene networks. Nat Commun, 2015; 6: 10105 . PMID: 26670742 . DOI: 10.1038/ncomms10105.

2015

Original articles in indexed journals - Functional Genomics

Costa D, Castelo R. Umbilical cord gene expression reveals the molecular architecture of the fetal inflammatory response in extremely preterm newborns. Pediatr Res, 2015; 79: 473-481 . PMID: 26539667 . DOI: 10.1038/pr.2015.233.

2015

Original articles in indexed journals - Functional Genomics

Tur I, Roverato A, Castelo R. Mapping eQTL Networks with Mixed Graphical Markov Models. Genetics, 198 (4): 1377-1393
. PMID: 25271303 . DOI: 10.1534/genetics.114.169573 DEC 2014.

2014

PhD Thesis - Functional Genomics

Tur, I. Mapping eQTL networks with mixed graphical models. Universitat Pompeu Fabra. May 12nd, 2014. Thesis Director: Castelo R

2014

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Esnaola M, Puig P, Gonzalez D, Castelo R, Gonzalez JR. A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments. BMC Bioinformatics, 2013; 14(1):254. PMID: 23965047 . DOI: 10.1186/1471-2105-14-254 AUG 21 2013.

2013

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Hänzelmann S, Castelo R, Guinney J. GSVA: gene set variation analysis for microarray and RNA-Seq data. BMC Bioinformatics, 2013; 16;14(1):7. PMID: 23323831 . DOI: 10.1186/1471-2105-14-7.

2013

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Roverato A, Castelo R. Learning undirected graphical models from multiple datasets with the generalized non-rejection rate. International Journal of Approximate Reasoning, 2012; 53; 9: 1326–1335 DOI: 10.1016/j.ijar.2012.05.007.

2012

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Mahdi T, Hanzelmann S, Salehi A et al. Secreted frizzled-related protein 4 reduces insulin secretion and is overexpressed in type 2 diabetes. Cell metabolism, 2012; 16; 5: 625-33. PMID: 23140642 . DOI: 10.1016/j.cmet.2012.10.009.

2012



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