Original articles in indexed journals - Computational Biochemistry and Biophysics > Computational Biophysics

Sadiq SK, de Fabritiis G. Explicit solvent dynamics and energetics of HIV-1 protease flap opening and closing. Proteins 2010; 78(14): 2873-2885. PMID: 20715057 . DOI: 10.1002/prot.22806.

2010

PhD Thesis - Computational Biochemistry and Biophysics > Computational Biochemistry

Lopez A. Computational Approaches to the Modelling of Topological and Dynamical Aspects of Biochemical Networks. Universitat Pompeu Fabra. Director: Villa-Freixa J. October 2010

2010

Original articles in indexed journals - Computational Biochemistry and Biophysics > Computational Biochemistry - Computational Biochemistry and Biophysics > Computational Biophysics

Cooper J, Cervenansky F, de Fabritiis G, Fenner J, Friboulet D, Giorgino T, Manos S, Martelli Y, Villa-Freixa J, Zasada S, Lloyd S, McCormack K, Coveney PV. The Virtual Physiological Human TOOLKIT. Philos T Roy Soc A, 2010; 368(1925): 3925-3936. PMID: 20643685 . DOI: 10.1098/rsta.2010.0144.

2010

Original articles in indexed journals - Computational Biochemistry and Biophysics > Computational Biochemistry

Rue P, Villa-Freixa J, Burrage K. Simulation methods with extended stability for stiff biochemical Kinetics. BMC Syst Biol, 2010; 4: 110. PMID: 20701766 . DOI: 10.1186/1752-0509-4-110.

2010

Original articles in indexed journals - Integrative Biomedical Informatics - PharmacoInformatics - Computational Biochemistry and Biophysics > Computational Biophysics

Selent J, Sanz F, Pastor M, de Fabritiis G. Induced effects of sodium ions on dopaminergic G-protein coupled receptors. PLoS Comput Biol 2010; 6(8): e1000884.. PMID: 20711351 . DOI: 10.1371/journal.pcbi.1000884.

2010

Original articles in indexed journals - Computational Biochemistry and Biophysics > Computational Biophysics

Giorgino T, Harvey M, de Fabritiis G. Distributed computing as a virtual supercomputer: tools to run and manage large-scale BOINC simulations. Comput Phys Commun, 2010; 181 (8): 1402-1409 DOI: 10.1016/j.cpc.2010.04.007.

2010

Original articles in indexed journals - Computational Biochemistry and Biophysics > Computational Biochemistry - Computational Biochemistry and Biophysics > Computational Biophysics

De Lomana ALG, Beg QK, De Fabritiis G, Villa-Freixa J. Statistical Analysis of Global Connectivity and Activity Distributions in Cellular Networks. Journal of Computational Biology. 2010 Jul;17(7):869-78. PMID: 20632868 . DOI: 10.1089/cmb.2008.0240.

2010

Original articles in indexed journals - Computational Biochemistry and Biophysics > Computational Biochemistry

Jaña G, Jimenez V, Villa-Freixa J, Prat-Resina X, Delgado E, Alderete J. Computational study on the carboligation reaction of acetohidroxyacid synthase: New approach on the role of the HEThDP(-) intermediate. Proteins, 2010; 78(7): 1774-1788. PMID: 20225259 . DOI: 10.1002/prot.22693.

2010

Original articles in indexed journals - Computational Biochemistry and Biophysics > Computational Biophysics

Buch I, Harvey MJ, Giorgino T, Anderson DP, De Fabritiis G. High-Throughput All-Atom Molecular Dynamics Simulations Using Distributed Computing. J Chem Inf Model, 2010; 50(3); 397-403. PMID: 20199097 . DOI: 10.1021/ci900455r.

2010

Original articles in indexed journals - Computational Biochemistry and Biophysics > Computational Biophysics

Giorgino T, Tormene P, Maggioni G, Pistarini C, Quaglini S. Wireless Support to Poststroke Rehabilitation: MyHeart's Neurological Rehabilitation Concept. Ieee T Inf Technol B 2009; 13(6): 1012-1018.. PMID: 19643710 . DOI: 10.1109.

2009