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PhD Thesis - Structural Bioinformatics

Guney E. Role of network topology based methods in discovering novel gene-phenotype associations. Director: Oliva B. September, 21 2012

2012

Original articles in indexed journals - Structural Bioinformatics

Guney E, Oliva B. Exploiting Protein-Protein Interaction Networks for Genome-Wide Disease-Gene Prioritization. PLoS One, 7 (9). PMID: 23028459 . DOI: 10.1371/journal.pone.0043557.

2012

Original articles in indexed journals - Structural Bioinformatics

Aranguren-Ibanez A, Martinez-Hoyer S, Orzaez M, Garcia-Garcia J, Serrano-Candelas E, Sole-Sanchez S, Vilardell J, Oliva B, Itarte E, Perez-Riba M. Phosphorylation of Ser 203 of RCAN3 increases its binding affinity to CnA. Febs J, 2012; 279 153-153; 1 SI

2012

Original articles in indexed journals - Structural Bioinformatics

Martinez-Hoyer S, Aranguren-Ibanez A, Garcia-Garcia J, Serrano-Candelas E, Vilardell J, Oliva B, Orzaez, M, Perez-Paya E, Itarte E, Perez-Riba M. Phosphorylation of RCAN proteins by protein kinase CK2 enhances their inhibitory role towards the calcineurin-NFATc signaling pathway. Febs Journal, 2012; 279 160-160; 1 SI

2012

Original articles in indexed journals - Structural Bioinformatics

Wright RH, Castellano G, Bonet J, Le Dily F, Font-Mateu J, Ballaré C, Nacht AS, Soronellas D, Oliva B, Beato M. CDK2-dependent activation of PARP-1 is required for hormonal gene regulation in breast cancer cells. Genes Dev, 2012; 26(17):1972-83 . PMID: 22948662 . DOI: 10.1101/gad.193193.112.

2012

Original articles in indexed journals - Structural Bioinformatics

Aguilar D, Oliva B, Marino Buslje C. Mapping the mutual information network of enzymatic families in the protein structure to unveil functional features. PLoS One, 2012; 7 (7). PMID: 22848494 . DOI: 10.1371/journal.pone.0041430.

2012

Original articles in indexed journals - Structural Bioinformatics

Sanz-Pamplona R, Garcia-Garcia J, Franco S, Messeguer X, Driouch K, Oliva B, Sierra A. A taxonomy of organ-specific breast cancer metastases based on a protein-protein interaction network. Mol Biosyst, 2012; 8 (8): 2085-2096. PMID: 22710377 . DOI: 10.1039/c2mb25104c.

2012

Original articles in indexed journals - Structural Bioinformatics

Garcia-Garcia J, Schleker S, Klein-Seetharaman J, Oliva B. BIPS: BIANA Interolog Prediction Server. A tool for protein-protein interaction inference Nucleic Acids Res, 2012; 40 (W1):W147-W151. PMID: 22689642 . DOI: 10.1093/nar/gks553.

2012

Original articles in indexed journals - Structural Bioinformatics

Garcia-Garcia J, Bonet J, Guney E, Fornes O, Planas J, Oliva B. Networks of protein-protein interactions: from uncertainty to molecular details. Molecular Informatics, 2012; 31 (5):342-362 DOI: 10.1002/minf.201200005.

2012

Original articles in indexed journals - Structural Bioinformatics

Aguilar D, Oliva B. Functional and topological characterization of transcriptional cooperativity in yeast. BMC Res Notes, 2012; 5(1): 227. PMID: 22574744 .

2012



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