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Original articles in indexed journals - Computational Biochemistry - Computational Biophysics

De Lomana ALG, Beg QK, De Fabritiis G, Villa-Freixa J. Statistical Analysis of Global Connectivity and Activity Distributions in Cellular Networks. Journal of Computational Biology. 2010 Jul;17(7):869-78. PMID: 20632868 . DOI: 10.1089/cmb.2008.0240.

2010

Original articles in indexed journals - Computational Biochemistry

Jaña G, Jimenez V, Villa-Freixa J, Prat-Resina X, Delgado E, Alderete J. Computational study on the carboligation reaction of acetohidroxyacid synthase: New approach on the role of the HEThDP(-) intermediate. Proteins, 2010; 78(7): 1774-1788. PMID: 20225259 . DOI: 10.1002/prot.22693.

2010

Book chapters - Computational Biochemistry

Alsina, B, López García de Lomana, A, Villà-Freixa, J, and Giráldez, F (2009). Developmental biology and mathematics: the rules of an embryo Contemporary Mathematics, 492:1-12,2009

2009

PhD Thesis - Computational Biochemistry

Khan, AK. Electrostatic Analysis of the Ras active site. Universitat Pompeu Fabra. Director Villa-Freixa J. 2009

2009

Original articles in indexed journals - Computational Biochemistry - Computational Biophysics

Guix FX, Ill-Raga G, Bravo R, Nakaya T, de Fabritiis G, Coma M, Miscione GP, Villa-Freixa J, Suzuki T, Fernandez-Busquets X, Valverde MA, de Strooper B, Muñoz FJ. Amyloid-dependent triosephosphate isomerase nitrotyrosination induces glycation and tau fibrillation. Brain, 2009;132(Pt 5):1335-45. PMID: 19251756 . DOI: 10.1093.

2009

PhD Thesis - Computational Biochemistry

Johnston, MA. Development of a Molecular Simulator and its Application to Conformational Changes in Biomolecules. Universitat Pompeu Fabra. Director: Villa-Freixa J. 2009

2009

Original articles in indexed journals - Structural Bioinformatics - Computational Biochemistry

Scheper J, Oliva B, Villa-Freixa J, Thomson TM. Analysis of electrostatic contributions to the selectivity of interactions between RING-finger domains and ubiquitin-conjugating enzymes. Proteins, 2009; 74(1): 92-103. PMID: 18615712 . DOI: 10.1002/prot.22120.

2009

PhD Thesis - Computational Biochemistry

Nonell-Canals, A. QM and QM/MM studies on organic and bioinorganic systems. Universitat Rovira i Vrigili. Director: Villa-Freixa J. 2008

2008

Original articles in indexed journals - Computational Biochemistry - Computational Biophysics

de Fabritiis G, Coveney PV, Villà-Freixa, J.Energetics of K+ permeability through Gramicidin A by forward-reverse steered molecular dynamics.Proteins: Structure, Function and Bioinformatics 2008 Oct;73(1):185-94.

. PMID: 18412256 .

2008

Other - Computational Biochemistry

Gomez-Garrido A, Marquez S, Hernandez-Sanchez M, Selivanov V, Cascante M, Villa-Freixa J, Kalko, SG . Integration of transcriptomics data into systems biology modeling in the BioBridge portal. CCIS Series 2008.

2008



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