Original articles in indexed journals - Structural Bioinformatics

Fornes O, Garcia-Garcia J, Bonet J, Oliva B. On the Use of Knowledge-Based Potentials for the Evaluation of Models of Protein-Protein, Protein-DNA, and Protein-RNA Interactions. Adv Protein Chem Str, 2014; 94: 77-120 . PMID: 24629186 . DOI: 10.1016/B978-0-12-800168-4.00004-4..

2014

Original articles in indexed journals - Systems Pharmacology

Spitzmüller A, Mestres J. Identification of host interactions for phenotypic antimalarial hits. J Cheminformatics, 2014; 6(Suppl 1):O12 . PMID: 24765110 .

2014

Original articles in indexed journals - Computational Science

Dainese E, De Fabritiis G, Sabatucci A, Oddi S, Angelucci CB, Di Pancrazio C, Giorgino T, Stanley N, Del Carlo M, Cravatt B, Maccarrone M. Membrane lipids are key-modulators of the endocannabinoid-hydrolase FAAH. Biochem J, 2014; 457 (3): 463-72. PMID: 24215562 . DOI: 10.1042/BJ20130960.

2014

Original articles in indexed journals - Computational Genomics - group

Ferreira PG, Jares P, Rico D, Gómez-López G, Martínez-Trillos A, Villamor N, Ecker S, González-Pérez A, Knowles DG, Monlong J, Johnson R, Quesada V, Gouin A, Djebali S, López-Guerra M, Colomer D, Royo C, Cazorla M, Pinyol M, Clot G, Aymerich M, Rozman M, Kulis M, Tamborero D, Papasaikas P, Blanc J, Gut M, Gut I, Puente XS, Pisano DG, Martin-Subero JI, López-Bigas N, López-Guillermo A, Valencia A, López-Otín C, Campo E, Guigo R. Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia. Genome Res, 2014; 24 (2): 212-226. PMID: 24265505 . DOI: 10.1101/gr.152132.112.

2014

Original articles in indexed journals - Integrative Biomedical Informatics

Espinet B, Ferrer A, Bellosillo B, Nonell L, Salar A, Fernández-Rodríguez C, Puigdecanet E, Gimeno J, Garcia-Garcia M, Vela MC, Luño E, Collado R, Navarro JT, de la Banda E, Abrisqueta P, Arenillas L, Serrano C, Lloreta J, Miñana B, Cerutti A, Florensa L, Orfao A, Sanz F, Solé F, Dominguez-Sola D, Serrano S. Distinction between asymptomatic monoclonal B-cell lymphocytosis with cyclin D1 overexpression and mantle cell lymphoma: from molecular profiling to flow cytometry. Clin Cancer Res, 2014; 20: 1007-1019. PMID: 24352646 . DOI: 10.1158/1078-0432.CCR-13-1077.

2014

Original articles in indexed journals - Computational Science

Bisignano P, Doerr S, Harvey MJ, Favia AD, Cavalli A, de Fabritiis G. Kinetic characterization of fragment binding in AmpC beta-lactamase by high-throughput molecular simulations. J Chem Inf Model, 2014; 54 (2): 362-366. PMID: 24444037 . DOI: 10.1021/ci4006063 FEB 2014.

2014

Original articles in indexed journals - Structural Bioinformatics

Bonet J, Planas-Iglesias J, García-García J, Marín-López MA, Fernández-Fuentes N*, Oliva B*. ArchDB 2014: structural classification of loops in proteins. Nucleic Acids Res, 2014;
42 (D1): D315-D319. PMID: 24265221 . DOI: 10.1093/nar/gkt1189 JAN 2014.

2014

Original articles in indexed journals - Computational Science

Huang X, De Fabritiis G. Understanding molecular recognition by kinetic network models constructed from molecular dynamics simulations. Adv Exp Med Biol. 2014;797:107-14. PMID: 24297279 . DOI: 10.1007/978-94-007-7606-7_9 2014.

2014

Original articles in indexed journals - Computational Science

Buch I, Ferruz N, De Fabritiis G. Computational modeling of an EGFR single-mutation resistance to cetuximab in colorectal cancer treatment. J Chem Inf Model, 2013; 53 (12):3123-3126. PMID: 24219403 . DOI: 10.1021/ci400456m DEC 2013.

2013

Original articles in indexed journals - Systems Pharmacology

Garcia-Reyero N, Escalon BL, Prats E, K Stanley J, Thienpont B, Melby NL, Barón E, Eljarrat E, Barceló D, Mestres J, Babin PJ, Perkins EJ, Raldúa D. Effects of BDE-209 contaminated sediments on zebrafish development and potential implications to human health. Environ Int. 2013 Dec 5;63C:216-223. PMID: 24317228 . DOI: 10.1016/j.envint.2013.11.012.

2013