Original articles in indexed journals - Computational Genomics - group

Ferreira PG, Jares P, Rico D, Gómez-López G, Martínez-Trillos A, Villamor N, Ecker S, González-Pérez A, Knowles DG, Monlong J, Johnson R, Quesada V, Gouin A, Djebali S, López-Guerra M, Colomer D, Royo C, Cazorla M, Pinyol M, Clot G, Aymerich M, Rozman M, Kulis M, Tamborero D, Papasaikas P, Blanc J, Gut M, Gut I, Puente XS, Pisano DG, Martin-Subero JI, López-Bigas N, López-Guillermo A, Valencia A, López-Otín C, Campo E, Guigo R. Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia. Genome Res, 2014; 24 (2): 212-226. PMID: 24265505 . DOI: 10.1101/gr.152132.112.

2014

Original articles in indexed journals

Milne R, La Vecchia C, Van Steen K, Hahn S, Buchholz M, Costello E, Esposito I, Hoheisel JD, Lange B, Lopez-Bigas N, Michalski CW, Real FX, Brand A, Malats N. EU Pancreas: An Integrated European Platform for Pancreas Cancer Research - from Basic Science to Clinical and Public Health Interventions for a Rare Disease. Public Health Genomics. 2013; 16 (6): 305-312. PMID: 24503591 . DOI: 10.1159/000355937 2013.

2013

Original articles in indexed journals

Steijger T, Abril JF, Engström PG, Kokocinski F, RGASP Consortium, Abril JF, Akerman M, Alioto T, Ambrosini G, Antonarakis SE, Behr J, Bertone P, Bohnert R, Bucher P, Cloonan N, Derrien T, Djebali S, Du J, Dudoit S, Engström PG, Gerstein M, Gingeras TR, Gonzalez D, Grimmond SM, Guigó R, Habegger L, Harrow J, Hubbard TJ, Iseli C, Jean G, Kahles A, Kokocinski F, Lagarde J, Leng J, Lefebvre G, Lewis S, Mortazavi A, Niermann P, Rätsch G, Reymond A, Ribeca P, Richard H, Rougemont J, Rozowsky J, Sammeth M, Sboner A, Schulz MH, Searle SM, Solorzano ND, Solovyev V, Stanke M, Steijger T, Stevenson BJ, Stockinger H, Valsesia A, Weese D, White S, Wold BJ, Wu J, Wu TD, Zeller G, Zerbino D, Zhang MQ, Hubbard TJ, Guigó R, Harrow J, Bertone P. Assessment of transcript reconstruction methods for RNA-seq. Nat Methods 2013; 10(12): 1177-1184 . PMID: 24185837 . DOI: doi: 10.1038/nmeth.2714.

2013

Original articles in indexed journals - Computational Genomics - group

Gonzalez-Perez A, Perez-Llamas C, Deu-Pons J, Tamborero D, Schroeder MP, Jene-Sanz A, Santos A, Lopez-Bigas N. IntOGen-mutations identifies cancer drivers across tumor types. Nat Methods, 2013; 10 (11): 1081-1082 . PMID: 24037244 . DOI: 10.1038/nmeth.2642.

2013

Original articles in indexed journals - Computational Genomics - group

Ambrus AM, Islam AB, Holmes KB, Moon NS, Lopez-Bigas N, Benevolenskaya EV, Frolov MV. Loss of dE2F Compromises Mitochondrial Function. Dev Cell, 2013; 25; 27(4): 438-51. PMID: 24286825 . DOI: 10.1016/j.devce1.2013.10.002 NOV 25 2013.

2013

Original articles in indexed journals - Computational Genomics - group

Tamborero D, Gonzalez-Perez A, Lopez-Bigas N. OncodriveCLUST: exploiting the positional clustering of somatic mutations to identify cancer genes. Bioinformatics, 2013; 29 (18): 2238-44 . PMID: 23884480 . DOI: 10.1093/bioinformatics/btt395.

2013

Original articles in indexed journals - Computational Genomics - group

Cancer Genome Atlas Research Network (including Lopez-Bigas N, González-Pérez A, Tamborero D), Weinstein JN, Collison EA, Mills GB, Shaw KM, Ozenberger BA, Ellrot K, Shmulevich I, Sander C, Stuart JM. The Cancer Genome Atlas Pan-Cancer Analysis Project. Nat Genet, 2013; 45: 1113–1120. PMID: 24071849 . DOI: 10.1038/ng.2764.

2013

Original articles in indexed journals - Computational Genomics - group

Gonzalez-Perez A, Jene-Sanz A, Lopez-Bigas N. The mutational landscape of chromatin regulatory factors across 4623 tumor samples. Genome Biol, 2013; 14(9):r106 . PMID: 24063517 . DOI: 10.1186/gb-2013-14-9-r106.

2013

Original articles in indexed journals - Computational Genomics - group

Tamborero D, Gonzalez-Perez A, Perez-Llamas C, Deu-Pons J, Kandoth C, Reimand J, Lawrence MS, Getz G, Bader GD, Ding L, Lopez-Bigas N. Comprehensive identification of mutational cancer driver genes across 12 tumor types. Sci Rep, 2013; 3 . PMID: 24084849 . DOI: 10.1038/srep02650.

2013

Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Mulero MC, Ferres-Marco D, Islam A, Margalef P, Pecoraro M, Toll A, Drechsel N, Charneco C, Davis S, Bellora N, Gallardo F, López-Arribillaga E, Asensio-Juan E, Rodilla V, González J, Iglesias M, Shih V, Alba M, Di Croce L, Hoffmann A, Miyamoto S, Villà-Freixa J, Lopez-Bigas N, Keyes WM, Domínguez M, Bigas A, Espinosa L. Chromatin-Bound IkBa Regulates a Subset of Polycomb Target Genes in Differentiation and Cancer. Cancer Cell, 2013; 24 (2): 151-166. PMID: 23850221 . DOI: 10.1016/j.ccr.2013.06.003.

2013