Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Mulero MC, Ferres-Marco D, Islam A, Margalef P, Pecoraro M, Toll A, Drechsel N, Charneco C, Davis S, Bellora N, Gallardo F, López-Arribillaga E, Asensio-Juan E, Rodilla V, González J, Iglesias M, Shih V, Alba M, Di Croce L, Hoffmann A, Miyamoto S, Villà-Freixa J, Lopez-Bigas N, Keyes WM, Domínguez M, Bigas A, Espinosa L. Chromatin-Bound IkBa Regulates a Subset of Polycomb Target Genes in Differentiation and Cancer. Cancer Cell, 2013; 24 (2): 151-166. PMID: 23850221 . DOI: 10.1016/j.ccr.2013.06.003.

2013

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Esnaola M, Puig P, Gonzalez D, Castelo R, Gonzalez JR. A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments. BMC Bioinformatics, 2013; 14(1):254. PMID: 23965047 . DOI: 10.1186/1471-2105-14-254 AUG 21 2013.

2013

Original articles in indexed journals - Computational Genomics - group

Jene-Sanz A, Renta V, Vilkova AV, Khramtsova GF, Khramtsov AI, Olopade OI, Lopez-Bigas N, Benevolenskaya EV. Expression of Polycomb targets predicts breast cancer prognosis. Mol Cell Biol, 2013; 33 (19): 3951-3961. PMID: 23918806 . DOI: 10.1128/MCB.00426.

2013

Original articles in indexed journals - Computational Genomics - group

International Cancer Genome Consortium Mutation Pathways and Consequences Subgroup of the Bioinformatics Analyses Working Group, Gonzalez-Perez A, Mustonen V, Reva B, Ritchie GR, Creixell P, Karchin R, Vazquez M, Fink JL, Kassahn KS, Pearson JV, Bader GD, Boutros PC, Muthuswamy L, Ouellette BF, Reimand J, Linding R, Shibata T, Valencia A, Butler A, Dronov S, Flicek P, Shannon NB, Carter H, Ding L,Sander C, Stuart JM, Stein LD, Lopez-Bigas N. Computational approaches to identify functional genetic variants in cancer genomes. Nat Methods, 2013; 10 (8): 723-9. PMID: 23900255 . DOI: 10.1038/nmeth.2562.

2013

Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Trilling M, Bellora N, Rutkowski AJ, de Graaf M, Dickinson P, Robertson K, Prazeres da Costa O, Ghazal P, Friedel CC, Alba MM, Dölken L. Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis. Nucleic Acids Res, 2013; 41 (17):8107-8125. PMID: 23832230 . DOI: 10.1093/nar/gkt589 SEP 2013.

2013

Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Bornberg-Bauer E, Alba MM. Dynamics and adaptive benefits of modular protein evolution. Curr Opin Struct Biol, 2013;  23 (3): 459-466. PMID: 23562500 . DOI: 10.1016/j.sbi.2013.02.012.

2013

Original articles in indexed journals - Computational Genomics - group

Barneda-Zahonero B. Roman-Gonzalez L, Collazo O, Rafati H, Islam AMMK, Bussmann LH, di Tullio A, De Andres L, Graf T, Lopez-Bigas N, Mahmoudi T, Parra M. HDAC7 Is a Repressor of Myeloid Genes Whose Downregulation Is Required for Transdifferentiation of Pre-B Cells into Macrophages. Plos Genetics, 9 (5):e1003503. PMID: 23696748 . DOI: 10.1371/journal.pgen.1003503.

2013

Original articles in indexed journals - Computational Genomics - group

de la Rica L, Urquiza JM, Gómez-Cabrero D, Islam AB, Lopez-Bigas N, Tegnér J, Toes RE, Ballestar E. Identification of novel markers in rheumatoid arthritis through integrated analysis of DNA methylation and microRNA expression. J Autoimmun, 2013; 41 6-16 . PMID: 23306098 . DOI: 10.1016/j.jaut.2012.12.005.

2013

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Zhang Z, Falaleeva M, Agranat-Tamir L, Pages A, Eyras E, Sperling J, Sperling R, Stamm S. The 5' untranslated region of the serotonin receptor 2C pre-mRNA generates miRNAs and is expressed in non-neuronal cells. Exp Brain Res, 2013; 230(4): 387-94 . PMID: 23494383 . DOI: 10.1007/s00221-013-3458-8..

2013

Original articles in indexed journals - Computational Genomics - group

Tamborero D, Lopez-Bigas N, Gonzalez-Perez A. Oncodrive-CIS: A Method to Reveal Likely Driver Genes Based on the Impact of Their Copy Number Changes on Expression. PLoS One, 2013; 8(2). PMID: 23408991 . DOI: 10.1371/journal.pone.0055489.

2013