Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Hartmann B, Castelo R, Miñana B, Peden E, Blanchette M, Rio DC, Singh R, Valcárcel J. Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster. Rna, 2011. 17(3):453-68. PMID: 21233220 . DOI: 21233220.

2011

Original articles in indexed journals - Computational Genomics - group

Islam A, Richter W, Lopez-Bigas N, Benevolenskaya EV. Selective targeting of histone methylation. Cell Cycle, 2011; 10(3):413-24.. PMID: 21270517 . DOI: 10.4161/cc.10.3.14705.

2011

Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Toll-Riera M,Laurie S, Alba MM. Lineage-specific Variation in Intensity of Natural Selection in Mammals. Molecular Biology and Evolution, 2011; 28(1): 383-398. PMID: 20688808 .

2011

Original articles in indexed journals - Computational Genomics - group

Nicolay BN, Bayarmagnai B, Islam A, Lopez-Bigas N, Frolov MV. Cooperation between dE2F1 and Yki/Sd defines a distinct transcriptional program necessary to bypass cell cycle exit. Genes & Development, 2011; 25(4):323-35. PMID: 21325133 . DOI: 10.1101/gad.1999211.

2011

Original articles in indexed journals - Computational Genomics - group

Richly H, Rocha-Viegas L, Domingues Ribeiro J, Demajo S, Gundem G, Lopez-Bigas N, Nakagawa T, Rospert S,Ito T, Di Croce L. Transcriptional activation of polycomb-repressed genes by ZRF1. Nature, 2010; 468 (7327) 1124–1128.. PMID: 20688808 . DOI: 10.1038/nature09574.

2010

Original articles in indexed journals - Computational Genomics - group

Aguilar H, Sole X, Bonifaci N, Serra-Musach J, Islam A, Lopez-Bigas N, Méndez-Pertuz M, Beijersbergen RL, Lázaro C, Urruticoechea A, Pujana MA. Biological reprogramming in acquired resistance to endocrine therapy of breast cancer. Oncogene, 2010;29 (45); 6071-6083 . PMID: 20711236 . DOI: 10.1038/onc.2010.333.

2010

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Corvelo A, Hallegger M, Smith CWJ, Eyras E. Genome-wide Association between Branch Point Properties and Alternative Splicing. PLoS Computational Biology. 2010. Nov 24;6(11). PMID: 21124863 . DOI: 10.1371/journal.pcbi.1001016.

2010

Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Nikolaou C, Althammer S, Beato M, Guigó R. Structural constraints revealed in consistent nucleosome positions in the genome of S. cerevisiae. Epigenet Chromatin, 2010. 3(1):20. PMID: 21073701 . DOI: 10.1186/1756-8935-3-20.

2010

Original articles in indexed journals - Computational Genomics - group

Beshiri ML, Islam A, DeWaal DC, Richter WF, Love J, Lopez-Bigas N, Benevolenskaya EV. Genome-wide Analysis using ChIP to Identify Isoform-specific Gene Targets. J Vis Exp; 41. PMID: 20644511 . DOI: 10.3791/2101.

2010

Original articles in indexed journals - Integrative Biomedical Informatics - Computational Genomics - group

Pettifer S, Ison J, Kalas M, Thorne D, McDermott P, Jonassen I, Liaquat A, Fernandez JM, Rodriguez JM, INB- Partners et al. The EMBRACE web service collection. Nucleic Acids Res,2010; 38: W683-8. PMID: 20462862 . DOI: 10.1093/nar/gkq297.

2010