Original articles in indexed journals - Integrative Biomedical Informatics - Structural Bioinformatics

Aguirre-Plans J, Piñero J, Souza T, Callegaro G, Kunnen SJ, Sanz F, Fernandez-Fuentes N, Furlong LI, Guney E, Oliva B. An ensemble learning approach for modeling the systems biology of drug-induced injury. Biol Direct, 2021; 16(1):5. PMID: 33435983 . DOI: 10.1186/s13062-020-00288-x.

2021

Original articles in indexed journals - Structural Bioinformatics

Aguirre-Plans J, Meseguer A, Molina-Fernandez R, Marín-López MA, Jumde G, Casanova K, Bonet J, Fornes O, Fernandez-Fuentes N, Oliva B. SPServer: split-statistical potentials for the analysis of protein structures and protein-protein interactions. BMC Bioinformatics, 2021; 22(1):4. PMID: 33407073 . DOI: 10.1186/s12859-020-03770-5.

2021

Original articles in indexed journals - Structural Bioinformatics

Walsh S, Izquierdo-Serra M, Acosta S, Edo A, Lloret M, Moret R, Bosch E, Oliva B, Bertranpetit J, Fernández-Fernández JM. Adaptive selection drives TRPP3 loss-of-function in an Ethiopian population. Sci Rep, 2020; 10(1): 20999. PMID: 33268808 . DOI: 10.1038/s41598-020-78081-z.

2020

Original articles in indexed journals - Structural Bioinformatics

Artigas L, Coma M, Matos-Filipe P, Aguirre-Plans J, Farrés J, Valls R, Fernandez-Fuentes N, de la Haba-Rodriguez J, Olvera A, Barbera J, Morales R, Oliva B, Mas JM. In-silico drug repurposing study predicts the combination of pirfenidone and melatonin as a promising candidate therapy to reduce SARS-CoV-2 infection progression and respiratory distress caused by cytokine storm. PLoS One, 2020; 15(10): e02401495. PMID: 33006999 . DOI: 10.1371/journal.pone.0240149.

2020

Original articles in indexed journals - Structural Bioinformatics

Meseguer A, Dominguez L, Bota PM, Aguirre-Plans J, Bonet J, Fernandez-Fuentes N, Oliva B. Using collections of structural models to predict changes of binding affinity caused by mutations in protein-protein interactions. Protein Sci, 2020; 29(10): 2112-2130. PMID: 32797645 . DOI: 10.1002/pro.3930.

2020

Original articles in indexed journals - Structural Bioinformatics

Jorba G, Aguirre-Plans J, Junet V, Segú-Vergés C, Ruiz JL, Pujol A, Fernández-Fuentes N, Mas JM, Oliva B. In-silico simulated prototype-patients using TPMS technology to study a potential adverse effect of sacubitril and valsartan. PLoS One, 2020; 15 (2): e0228926  . PMID: 32053711 . DOI: 10.1371/journal.pone.0228926. eCollection 2020..

2020

Original articles in indexed journals - Structural Bioinformatics

Aguilar D, Lemonnier N, Koppelman GH, Melén E, Oliva B, Pinart M, Guerra S, Bousquet J, Anto JM. Understanding allergic multimorbidity within the non-eosinophilic interactome. PLoS One, 2019; 14(11): e0224448. PMID: 31693680 . DOI: 10.1371/journal.pone.0224448.

2019

Original articles in indexed journals - Structural Bioinformatics

Resa-Infante P, Bonet J, Thiele S, Alawi M, Stanelle-Bertram S, Tuku B, Beck S, Oliva B, Gabriel G. Alternative interaction sites in the influenza A virus nucleoprotein mediate viral escape from the importin-α7 mediated nuclear import pathway. FEBS J, 2019; 286(17):3374-3388. PMID: 31044563 . DOI: 10.1111/febs.14868.

2019

Original articles in indexed journals - Structural Bioinformatics

Picón-Pagès P, Bonet J, García-García J, Garcia-Buendia J, Gutierrez D, Valle J, Gómez-Casuso CES, Sidelkivska V, Alvarez A, Perálvarez-Marín A, Suades A, Fernàndez-Busquets X, Andreu D, Vicente R, Oliva B, Muñoz FJ. Human Albumin Impairs Amyloid beta-peptide Fibrillation Through its C-terminus: From docking Modeling to Protection Against Neurotoxicity in Alzheimer's disease. Comput Struct Biotechnol J, 2019; 17: 963-971  . PMID: 31360335 . DOI: 10.1016/j.csbj.2019.06.017.

2019

Original articles in indexed journals - Structural Bioinformatics

Menden MP, Wang D, Mason MJ, Szalai B, Bulusu KC, Guan Y, Yu T, Kang J, Jeon M, Wolfinger R, Nguyen T, Zaslavskiy M; AstraZeneca-Sanger Drug Combination DREAM Consortium (including Oliva B), Jang IS, Ghazoui Z, Ahsen ME, Vogel R, Neto EC, Norman T, Tang EKY, Garnett MJ, Veroli GYD, Fawell S, Stolovitzky G, Guinney J, Dry JR, Saez-Rodriguez J. Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen. Nat Commun, 2019; 17; 10(1): 2674. PMID: 31209238 . DOI: 10.1038/s41467-019-09799-2.

2019