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Publications

Results 301 - 310 of about 1093

Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Trilling M, Bellora N, Rutkowski AJ, de Graaf M, Dickinson P, Robertson K, Prazeres da Costa O, Ghazal P, Friedel CC, Alba MM, Dölken L. Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis. Nucleic Acids Res, 2013; 41 (17):8107-8125. PMID: 23832230 . DOI: 10.1093/nar/gkt589 SEP 2013.

2013

Original articles in indexed journals - Computational Science

Perez-Hernandez G, Paul F, Giorgino T, De Fabritiis G, Noé F. Identification of slow molecular order parameters for Markov model construction. J Chem Phys, 2013; 139(1):015102. PMID: 23822324 . DOI: 10.1063/1.4811489.

2013

Original articles in indexed journals - Computational Science

Venken T, Voet A, De Maeyer M, De Fabritiis G, Sadiq SK. Rapid Conformational Fluctuations of Disordered HIV-1 Fusion Peptide in Solution. J Chem Theory Comput, 2013; 9; 7: 2870-2874. PMID: . DOI: 10.1021/ct300856r.

2013

Original articles in indexed journals - Structural Bioinformatics

Garriga D, Ferrer-Orta C, Querol-Audi J, Oliva B, Verdaguer N. Role of Motif B Loop in Allosteric Regulation of RNA-Dependent RNA Polymerization Activity. J Mol Biol, 2013; 425 (13):2279-2287 . PMID: 23542342 . DOI: 10.1016/j.jmb.2013.03.034.

2013

PhD Thesis - Evolutionary Genomics - Computational Genomics - group

Laurie, S. Mutation, duplication and selection in mammalian genomes. Universitat Pompeu Fabra, July 25th 2013. Thesis Director: Albà MM.

2013

Other - Computational Science

Dainese E, De Fabritiis G, Sabatucci A, Oddi S, Angelucci CB, Pancrazio CD, Giorgino T, Stanley N, Carlo MD, Cravatt B, Maccarrone M. Key role for membrane lipids in orchestrating the endocannabinoid hydrolase (FAAH) function and subcellular localization. FEBS Journal, 2013; 280, 135-135; 1 SI DOI: WOS:000325919200419.

2013

Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Bornberg-Bauer E, Alba MM. Dynamics and adaptive benefits of modular protein evolution. Curr Opin Struct Biol, 2013;  23 (3): 459-466. PMID: 23562500 . DOI: 10.1016/j.sbi.2013.02.012.

2013

PhD Thesis - Computational RNA Biology - Computational Genomics - group

Agirre, E. Epigenetics in alternative splicing: links between chromatin structure, transcription and non-coding RNA mediated regulation. Universitat Pompeu Fabra, June 2013. Director: Eyras E.

2013

Original articles in indexed journals - Integrative Biomedical Informatics - Systems Pharmacology

Oliveira JL, Lopes P, Nunes T, Campos D, Boyer S, Ahlberg E, van Mulligen EM, Kors JA, Singh B, Furlong LI, Sanz F, Bauer-Mehren A, Carrascosa MC, Mestres J, Avillach P, Diallo G, Díaz Acedo C, van der Lei J. The EU-ADR Web Platform: delivering advanced pharmacovigilance tools. Pharmacoepidemiol Drug Saf, 2013; 22 (5): 459-467. PMID: 23208789 . DOI: 10.1002/pds.3375.

2013

Original articles in indexed journals - Structural Bioinformatics

Martínez-Høyer S, Aranguren-Ibáñez A, García-García J, Serrano-Candelas E, Vilardell J, Nunes V, Aguado F, Oliva B, Itarte E, Pérez-Riba M. Protein kinase CK2-dependent phosphorylation of the human Regulators of Calcineurin reveals a novel mechanism regulating the calcineurin-NFATc signaling pathway. Biochim Biophys Acta, 2013; 1833 (10):2311-2321 . PMID: 23732701 . DOI: 10.1016/j.bbamcr.2013.05.021.

2013



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