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PhD Thesis - Evolutionary Genomics

Ruiz-Orera J. ​U​nderstanding the mechanisms of de novo gene evolution using transcriptomics data. Universitat Pompeu Fabra. January, 19th 2017. Thesis Director: Alba MM.

2017

Original articles in indexed journals - Evolutionary Genomics

Domazet-Loso T, Carvunis AR, Alba MM, Sestak MS, Bakaric R, Neme R, Tautz D. No evidence for phylostratigraphic bias impacting inferences on patterns of gene emergence and evolution. Mol Biol Evol, 2017; 34 (4): 843-856 . PMID: 28087778 . DOI: 10.1093/molbev/msw284 APR 2017.

2017

Original articles in indexed journals - Evolutionary Genomics

Abascal F, Corvelo A, Cruz F, Villanueva-Cañas JL, Vlasova A, Marcet-Houben M, Martínez-Cruz B, Cheng JY, Prieto P, Quesada V, Quilez J, Li G10, García F, Rubio-Camarillo M, Frias L, Ribeca P, Capella-Gutiérrez S, Rodríguez JM, Câmara F, Lowy E, Cozzuto L, Erb I, Tress ML, Rodriguez-Ales JL, Ruiz-Orera J, Reverter F, Casas-Marce M, Soriano L, Arango JR, Derdak S, Galán B, Blanc J, Gut M, Lorente-Galdos B, Andrés-Nieto M, López-Otín C, Valencia A, Gut I, García JL, Guigó R, Murphy WJ, Ruiz-Herrera A, Marques-Bonet T, Roma G, Notredame C, Mailund T, Alba MM, Gabaldón T, Alioto T, Godoy JA. Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx. Genome Biol, 2016; 14; 17(1): 251 . PMID: 27964752 . DOI: 10.1186/s13059-016-1090-1.

2016

Original articles in indexed journals - Evolutionary Genomics

Faherty SL, Villanueva-Cañas JL, Klopfer PH, Alba MM, Yoder AD. Gene expression profiling in the hibernating primate, Cheirogaleus medius. Genome Biol Evol, 2016; 8 (8): 2413-2426 . PMID: 27412611 . DOI: 10.1093/gbe/evw163.

2016

Original articles in indexed journals - Evolutionary Genomics

Vartia S, Villanueva-Cañas JL, Finarelli J, Farrell ED, Collins PC, Hughes GM, Carlsson JE, Gauthier DT, McGinnity P, Cross TF, FitzGerald RD, Mirimin L, Crispie F, Cotter PD, Carlsson J. A novel method of microsatellite genotyping-by-sequencing using individual combinatorial barcoding. R Soc Open Sci, 2016; 3(1): 150565 . PMID: 26909185 . DOI: 10.1098/rsos.150565. eCollection 2016.

2016

Original articles in indexed journals - Evolutionary Genomics

Ruiz-Orera J, Hernandez-Rodriguez J, Chiva C, Sabidó E, Kondova I, Bontrop R, Marqués-Bonet T, Alba MM. Origins of De Novo Genes in Human and Chimpanzee. PLoS Genet, 2015; 11(12) :e1005721 . PMID: 26720152 . DOI: 10.1371/journal.pgen.1005721. eCollection 2015.

2015

PhD Thesis - Evolutionary Genomics

Villanueva-Cañas JL. Insights into mammalian adaptive evolution through genomics data. University Pompeu Fabra. Thesis Director: Albà MM. November 20, 2015.

2015

Original articles in indexed journals - Evolutionary Genomics

Subirana JA, Albà MM, Messeguer X. High evolutionary turnover of satellite families in Caenorhabditis. BMC Evol Biol, 2015; 15(1):218 . PMID: 26438045 . DOI: 10.1186/s12862-015-0495-x.

2015

Original articles in indexed journals - Evolutionary Genomics

Baldo L, Riera JL, Tooming-Klunderud A, Alba MM, Salzburger W. Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes. PLoS ONE, 2015; 10(5): e0127462. PMID: 25978452 . DOI: 10.1371/journal.pone.0127462 MAY 15 2015.

2015

Original articles in indexed journals - Evolutionary Genomics

Radó-Trilla N, Arató K, Pegueroles C, Raya A, de la Luna S, Alba MM. Key role of amino acid repeat expansions in the functional diversification of duplicated transcription factors. Mol Biol Evol, 2015; 32 (9):2263-2272 . PMID: 25931513 . DOI: 10.1093/molbev/msv103 SEP 2015.

2015



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