Original articles in indexed journals - Structural Bioinformatics

Cuesta AM, Sainz-Pastor N, Bonet J et al. Multivalent antibodies: when design surpasses evolution. Trends in Biotechnology, 2010; 28; 7: 355-362. PMID: 20447706 . DOI: 10.1016/j.tibtech.2010.03.007.

2010

Original articles in indexed journals - Structural Bioinformatics

Romero-Isart N, Oliva B, Vasak M. Influence of bonding interactions on the structure and dynamics of metallothioneins. J Mol Model 2010; 16(3): 387-394.. PMID: 19609577 . DOI: 10.1007/s00894-009-0542-x.

2010

Original articles in indexed journals - Structural Bioinformatics

García-García J, Guney E, Aragüés R, Planas-Iglesias J, Oliva B. Biana: a software framework for compiling biological interactions and analyzing networks. BMC Bioinformatics 2010; 11(1): 56.. PMID: 20105306 . DOI: 10.1186/1471-2105-11-56.

2010

Original articles in indexed journals - Structural Bioinformatics

Aloy P, Oliva B. Splitting statistical potentials into meaningful scoring functions: Testing the prediction of near-native structures from decoy conformations. BMC Struct Biol 2009; 9(1):71.. PMID: 19917096 . DOI: 10.1186.

2009

Original articles in indexed journals - Structural Bioinformatics

Gitter A, Siegfried Z, Klutstein M, Fornes O, Oliva B, Simon I, Bar-Joseph Z. Backup in gene regulatory networks explains differences between binding and knockout results. Mol Syst Biol. 2009;5:276. PMID: 19536199 . DOI: 10.1038.

2009

Original articles in indexed journals - Structural Bioinformatics

Fornes O, Aragues R, Espadaler J, Marti-Renom MA, Sali A, Oliva B. ModLink+: improving fold recognition by using protein-protein interactions. Bioinformatics, 2009;25(12):1506-12. PMID: 19357100 . DOI: 10.1093.

2009

Original articles in indexed journals - Structural Bioinformatics

Cuesta AM, Sánchez-Martín D, Sanz L, Bonet J, Compte M, Kremer L, Blanco FJ, Oliva B, Alvarez-Vallina L. In vivo tumor targeting and imaging with engineered trivalent antibody fragments containing collagen-derived sequences. PLoS One. 2009;4(4):e5381. PMID: 19401768 . DOI: 10.1371/journal.pone.0005381.

2009

Original articles in indexed journals - Structural Bioinformatics - Computational Biochemistry

Scheper J, Oliva B, Villa-Freixa J, Thomson TM. Analysis of electrostatic contributions to the selectivity of interactions between RING-finger domains and ubiquitin-conjugating enzymes. Proteins, 2009; 74(1): 92-103. PMID: 18615712 . DOI: 10.1002/prot.22120.

2009

Original articles in indexed journals - Integrative Biomedical Informatics - Structural Bioinformatics

Hofmann-Apitius M, Fluck J, Furlong L, Fornes O, Kolárik C, Hanser S, Boeker M, Schulz S, Sanz F, Klinger R, Mevissen T, Gattermayer T, Oliva B, Friedrich CM. Knowledge environments representing molecular entities for the virtual physiological human. Philos Trans R Soc Lond A. 2008 Sep;366(1878):3091–110. . PMID: 18559317 . DOI: 10.1098.

2008

Original articles in indexed journals - Structural Bioinformatics

Martín B, Sanz R, Aragüés R, Oliva B, Sierra A. Functional clustering of metastasis proteins describes plastic adaption resources of breast-cancer cells to new microenvironments. J Proteome Res. 2008;7(8)3242-53.. PMID: 18582095 .

2008