Original articles in indexed journals - PharmacoInformatics

Radchenko T, Fontaine F, Morettoni L, Zamora I. Software-aided workflow for predicting protease-specific cleavage sites using physicochemical properties of the natural and unnatural amino acids in peptide-based drug discovery. PLoS One, 2019; 14(1): e0199270. PMID: 30620739 . DOI: 10.1371/journal.pone. 0199270.

2019

Original articles in indexed journals - Structural Bioinformatics

Sharma P, Lioutas A, Fernandez-Fuentes N, Quilez J, Carbonell-Caballero J, Wright RHG, Di Vona Ch, Le Dily F, Schüller R, Eick D, Oliva B, Beato M. Arginine Citrullination at the C-Terminal Domain Controls RNA Polymerase II Transcription. Mol Cell, 2019; 73 (1): 84-96.e7. PMID: 30472187 . DOI: 10.1016/ j.molcel.2018.10.016.

2019

PhD Thesis - Functional Genomics

Puigdevall P. Identification of genetic modifiers of penetrance in human inherited disease. Universitat Pompeu Fabra. Jan 17th, 2019. Thesis Director: Castelo R

2019

Original articles in indexed journals - Integrative Biomedical Informatics

Ronzano F, Gutiérrez-Sacristán A, Furlong LI. Comorbidity4j: a tool for interactive analysis of disease comorbidities over large patient datasets. Bioinformatics, 2019; 35 (18): 3530-3532. PMID: 30689768 . DOI: 10.1093/ bioinformatics/btz061.

2019

PhD Thesis - Computational RNA Biology

Trincado JL. Characterization of clinically relevant RNA alterations for personalized cancer medicine. Universitat Pompeu Fabra. January 28th, 2019. Thesis Director: Eyras E. 

2019

Original articles in indexed journals - Evolutionary Genomics

Ruiz-Orera J, Alba MM. Frequent translation of small open reading frames in evolutionary conserved lncRNA regions. bioRxiv, 2018. DOI: https://doi.org/10.1101/348326.

2018

Original articles in indexed journals - Integrative Biomedical Informatics

Speck-Planche A. Combining Ensemble Learning with a Fragment-Based Topological Approach To Generate New Molecular Diversity in Drug Discovery: In Silico Design of Hsp90 Inhibitors. ACS Omega, 2018; 3(11): 14704- 14716. PMID: 30555986 . DOI: 10.1021/acsomega.8b02419.

2018

Original articles in indexed journals - Evolutionary Genomics

Blevins WR, Tavella T, Moro SG, Blasco-Moreno B, Closa-Mosquera A, Diez J, Carey LB, Alba MM. Using ribosome profiling to quantify differences in protein expression: a case study in Saccharomyces cerevisiae oxidative stress conditions. bioRxiv, 2018 DOI: 10.1101/501478.

2018

Original articles in indexed journals - Evolutionary Genomics

Ruiz-Orera J, Alba MM. Translation of Small Open Reading Frames: Roles in Regulation and Evolutionary Innovation. Trends Genet, 2018; 35(3): 186-198. PMID: 30606460 . DOI: 10.1016/j.tig.2018.12.003.

2018

Original articles in indexed journals - Computational Science

Jiménez Luna J, Sabbadin D, Cuzzolin A, Martínez-Rosell G, Gora J, Manchester J, Duca JS, De Fabritiis G. PathwayMap: Molecular pathway association with self-normalizing neural networks. J Chem Inf Model, 2018; 59(3): 1172-1181. PMID: 30586501 . DOI:  10.1021/acs.jcim.8b00711.

2018