Book chapters - Computational Genomics > Evolutionary Genomics

Mularoni L, Toll-Riera M, Alba MM. Comparative Genetics of Trinucleotide Repeats in the Human and Ape Genomes. Handbook of Human Molecular Evolution  2008. John Wiley & Sons Ltd: Chichester.

2008

Other - Computational Genomics > Biomedical Genomics - Computational Genomics

Furney SJ, Madden SF, Kisiel TA, Higgins DG, Lopez-Bigas N. Distinct patterns in the regulation and evolution of human cancer genes. In Silico Biol, 2008; 8(1): 33-46. PMID: 18430988 .

2008

Original articles in indexed journals - Computational Genomics > Evolutionary Genomics

Bellora N, Farré D, Alba MM. Positional bias of general and tissue-specific regulatory motifs in mouse promoters. BMC Genomics 2007, 8: 459

2007

Original articles in indexed journals - Computational Genomics > Evolutionary Genomics

Farre D, Bellora N, Mularoni L, Messeguer X, Alba MM. Housekeeping genes tend to show reduced upstream sequence conservation. Genome Biol 2007; 8(7): R140.

2007

Original articles in indexed journals - Computational Genomics > Regulatory Genomics - Computational Genomics > Biomedical Genomics - Computational Genomics - Computational Genomics > Functional Genomics

Birney E, Stamatoyannopoulos JA, Dutta A, Guigo R, Gingeras TR, Margulies EH, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 2007 Jun;447(7146):799-816 . PMID: 17571346 . DOI: 10.1038/nature05874.

2007

Original articles in indexed journals - Computational Genomics > Evolutionary Genomics

Alba MM, Castresana L. On homology searches by protein Blast and the characterization of the age of genes. BMC Evol Biol 2007; 7:53.

2007

Original articles in indexed journals - Computational Genomics > Biomedical Genomics - Computational Genomics

Calvo B, Lopez-Bigas N, Furney SJ, Larranaga P, Lozano JA. A partially supervised classification approach to dominant and recessive human disease gene prediction. Comput Methods Programs Biomed, 2007; 85(3):229-37 . PMID: 17258838 . DOI: 10.1016/j.cmpb.2006.12.003.

2007

Original articles in indexed journals - Computational Genomics > Evolutionary Genomics - Computational Genomics

Mularoni L, Veitia RA, Alba MM. Highly constrained proteins contain an unexpectedly large number of amino acid tandem repeats. Genomics, 2007; 89(3): 316-25

2007

Original articles in indexed journals - Computational Genomics > Evolutionary Genomics - Computational Genomics

Bellora N, Farre D, Alba MM. PEAKS: identification of regulatory motifs by their position in DNA sequences. Bioinformatics, 2007; 23(2): 243-4

2007

Original articles in indexed journals - Computational Genomics > Regulatory Genomics - Computational Genomics - Computational Genomics > Functional Genomics

Lyle R, Prandini P, Osoegawa K, Hallers B, Humphray S, Zhu B, Eyras E, Castelo R, Bird CP, Cagos S, Scott C, Cox A, Deutsch S, Ucla C, Cruts M, Dahoun S, She X, Bena F, Wang SY, Van Broeckhoven C, Eichler EE, Guigó R, Rogers J, de Jong PJ, Reymond A, Antonarakis SE. Islands of euchromatin-like sequence and expresse d polymorphic sequences within the short arm of human chromosome 21, Genome Res. 2007; 17:1690-96. PMID: 17895424 . DOI: 10.1101/gr.6675307.

2007