Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Bellora N, Farre D, Alba MM. PEAKS: identification of regulatory motifs by their position in DNA sequences. Bioinformatics, 2007; 23(2): 243-4

2007

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group - Functional Genomics

Lyle R, Prandini P, Osoegawa K, Hallers B, Humphray S, Zhu B, Eyras E, Castelo R, Bird CP, Cagos S, Scott C, Cox A, Deutsch S, Ucla C, Cruts M, Dahoun S, She X, Bena F, Wang SY, Van Broeckhoven C, Eichler EE, Guigó R, Rogers J, de Jong PJ, Reymond A, Antonarakis SE. Islands of euchromatin-like sequence and expresse d polymorphic sequences within the short arm of human chromosome 21, Genome Res. 2007; 17:1690-96. PMID: 17895424 . DOI: 10.1101/gr.6675307.

2007

Original articles in indexed journals - Computational Genomics - group

Marques-Bonet T , Sanchez-Ruiz J, Armengol L, Khaja R , Bertranpetit J, Rocchi M, Gazave E, Lopez-Bigas N, Navarro A. On the association between chromosomal rearrangements and genic evolution in humans and chimpanzees. Genome Biology, 2007; 8(10). PMID: 17971225 . DOI: 10.1186/gb-2007-8-10-r230.

2007

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Denoeud F, Kapranov P, Ucla C, Frankish A, Castelo R, Drenkow J,  Lagarde J, Alioto T, Manzano C, Chrast J, Dike S, Wyss C, Henrichsen CN, Holroyd N, Dickson MC, Taylor R, Hance Z, Foissac S, Myers RM, Rogers J, Hubbard T, Harrow J, Guigó R, Gingeras TR, Antonarakis SE, Reymond A. Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions. Genome Res 2007; 17:746-759. PMID: 17567994 .

2007

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Segura J, Fillat C, Andreu D, Llop J, Millan O, de la Torre BG, Nikolovski Z, Gomez V, Andreu N, Pinyot A, Castelo R, Gispert JD, Pascual JA. Monitoring gene therapy by external imaging of mRNA: pilot study on murine Erythropoietin, Therapeutic Drug Monitoring 2007, 29(5):612-618.. PMID: 17898652 .

2007

PhD Thesis - Computational Genomics - group

Furney SJ. In silico analysis of human cancer and disease genes. Universitat Pompeu Fabra. Director: Lopez-Bigas N. 2007

2007

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Castelo R, Roverato A. A robust procedure for Gaussian graphical model search from microarray data with p larger than n. Journal of Machine Learning Research, 2006; 2621-50

2006

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Parra G, Reymond A, Dabbouseh N, Dermitzakis ET, Castelo R, Thompson TM, Antonarakis SE, Guigó R. Tandem chimerism as a means to increase protein complexity in the human genome. Genome Res, 2006; 19(8): 475-84

2006

Original articles in indexed journals - Evolutionary Genomics - Computational Genomics - group

Furney SJ, Alba MM, Lopez-Bigas N. Differences in the evolutionary history of disease genes affected by dominant or recessive mutations. BMC Genomics, 2006; 7:165. PMID: 16817963 . DOI: 10.1186/1471-2164-7-165.

2006

Book chapters - Computational Genomics - group

Harrow J, Denoeud F, Frankish A, Reymond A, Chen CK, Chrast J, Lagarde J, Gilbert JGR, Storey R, Swarbreck D, Rossier C, Ucla C, Hubbard T, Antonarakis SE, Guigó R. GENCODE: producing a reference annotation for ENCODE. Genome Biol 2006; 7 Supl 1: S4

2006