Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Althammer S, Pages A, Eyras E. Predictive models of gene regulation from high-throughput epigenomics data. Comp Funct Gen, 2012; 284786. PMID: 22924024 . DOI: 10.1155/2012/284786.

2012

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Plass M, Codony-Servat C, Ferreira PG, Vilardell J, Eyras E. RNA secondary structure mediates alternative 3'ss selection in Saccharomyces cerevisiae. RNA-a publication of the RNA society, 2012; 18 (6):1103-1115. PMID: 22539526 . DOI: 10.1261/rna.030767.111.

2012

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Erb I, González-Vallinas JR, Bussotti G, Blanco E, Eyras E, Notredame C. Use of ChIP-Seq data for the design of a multiple promoter-alignment method. Nucleic Acids Res, 2012; 40 (7): e52. PMID: 22230796 . DOI: 10.1093/nar/gkr1292.

2012

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Shen M, Eyras E, Wu J, Khanna A, Josiah S, Rederstorff M, Zhang MQ, Stamm S. Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression. Nucleic acids research, 2011; 

39 (22):9720-9730. PMID: 21880592 . DOI: 10.1093/nar/gkr684 DEC 2011.

2011

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Ortiz-Zapater E, Pineda D, Martinez-Bosch N, Fernandez-Miranda G, Iglesias M, Alameda F, Moreno M, Elisiscovich C, Eyras E, Real FX, Mendez R, Navarro P. Key contribution of CPEB4-mediated translational control to cancer progression. Nat Med, 2011;18(1):83-90 . PMID: 22138752 . DOI: 10.1038/nm.2540..

2011

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Fernandez N, Fernandez-Miragall O, Ramajo J, Garcia-Sacristan A, Bellora N, Eyras E, Briones C, Martinez-Salas E. Structural basis for the biological relevance of the invariant apical stem in IRES-mediated translation. Nucleic Acids Research, 2011; 39 (19): 8572-8585. PMID: 21742761 . DOI: 10.1093/nar/gkr560.

2011

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Althammer S, Gonzalez-Vallinas J, Ballare C, Beato M, Eyras E. Pyicos: A versatile toolkit for the analysis of high-throughput sequencing data. Bioinformatics, 2011;27 (24): 3333-3340. PMID: 21994224 . DOI: 10.1093/bioinformatics/btr570.

2011

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Meyer M, Plass M, Perez-Valle J, Eyras E, Vilardell J. Deciphering 3'ss Selection in the Yeast Genome Reveals an RNA Thermosensor that Mediates Alternative Splicing. Molecular Cell, 2011; 43(6):1033-1039. PMID: 21925391 . DOI: 10.1016/j.molcel.2011.07.030.

2011

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Corvelo A, Hallegger M, Smith CWJ, Eyras E. Genome-wide Association between Branch Point Properties and Alternative Splicing. PLoS Computational Biology. 2010. Nov 24;6(11). PMID: 21124863 . DOI: 10.1371/journal.pcbi.1001016.

2010

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group

Gal-Mark N, Schwartz S, Ram O, Eyras E et al. The Pivotal Roles of TIA Proteins in 5 ' Splice-Site Selection of Alu Exons and Across Evolution. PLOS GENETICS, 2009; 5; 11; e1000717. PMID: 19911040 . DOI: 10.1371/journal.pgen.1000717.

2009