Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Castelo R, Roverato A. Reverse engineering molecular regulatory networks from microarray data with qp-graphs, J Comput Biol, 2009, 16(2):213-227. PMID: 19178140 . DOI: 10.1089.

2009

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Hartmann B, Castelo R, Blanchette M, Boue S, Rio DC, Valcarcel J. Global analysis of alternative splicing regulation by insulin and wingless signalling in Drosophila cells. Genome Biology, 10:R11, 2009.. PMID: 19178699 . DOI: 10.1186.

2009

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group - Functional Genomics

Birney E, Stamatoyannopoulos JA, Dutta A, Guigo R, Gingeras TR, Margulies EH, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 2007 Jun;447(7146):799-816 . PMID: 17571346 . DOI: 10.1038/nature05874.

2007

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group - Functional Genomics

Lyle R, Prandini P, Osoegawa K, Hallers B, Humphray S, Zhu B, Eyras E, Castelo R, Bird CP, Cagos S, Scott C, Cox A, Deutsch S, Ucla C, Cruts M, Dahoun S, She X, Bena F, Wang SY, Van Broeckhoven C, Eichler EE, Guigó R, Rogers J, de Jong PJ, Reymond A, Antonarakis SE. Islands of euchromatin-like sequence and expresse d polymorphic sequences within the short arm of human chromosome 21, Genome Res. 2007; 17:1690-96. PMID: 17895424 . DOI: 10.1101/gr.6675307.

2007

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Denoeud F, Kapranov P, Ucla C, Frankish A, Castelo R, Drenkow J,  Lagarde J, Alioto T, Manzano C, Chrast J, Dike S, Wyss C, Henrichsen CN, Holroyd N, Dickson MC, Taylor R, Hance Z, Foissac S, Myers RM, Rogers J, Hubbard T, Harrow J, Guigó R, Gingeras TR, Antonarakis SE, Reymond A. Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions. Genome Res 2007; 17:746-759. PMID: 17567994 .

2007

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Segura J, Fillat C, Andreu D, Llop J, Millan O, de la Torre BG, Nikolovski Z, Gomez V, Andreu N, Pinyot A, Castelo R, Gispert JD, Pascual JA. Monitoring gene therapy by external imaging of mRNA: pilot study on murine Erythropoietin, Therapeutic Drug Monitoring 2007, 29(5):612-618.. PMID: 17898652 .

2007

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Castelo R, Roverato A. A robust procedure for Gaussian graphical model search from microarray data with p larger than n. Journal of Machine Learning Research, 2006; 2621-50

2006

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Parra G, Reymond A, Dabbouseh N, Dermitzakis ET, Castelo R, Thompson TM, Antonarakis SE, Guigó R. Tandem chimerism as a means to increase protein complexity in the human genome. Genome Res, 2006; 19(8): 475-84

2006

Original articles in indexed journals - Computational RNA Biology - Computational Genomics - group - Functional Genomics

Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis S, Reese MG. EGASP: The human encode genome annotation assessment project. Genome Biol 2006; 7 Supl 1: S2

2006

Original articles in indexed journals - Computational Genomics - group - Functional Genomics

Abril JF, Castelo R, Guigó R. Comparison of splice sites in mammals and chicken. Genome Res 2005; 15: 111-9.

2005