Original articles in indexed journals - Evolutionary Genomics - Computational RNA Biology

de la Rubia I, Indi JA, Carbonell S, Lagarde J, Alba MM, Eyras E. Reference-free reconstruction and quantification of transcriptomes from long-read sequencing. bioRxiv, 2020 DOI: 10.1101/2020.02.08.939942.

2020

Original articles in indexed journals - Evolutionary Genomics

Ruiz-Orera J, Alba MM. Conserved regions in long non-coding RNAs contain abundant translation and protein-RNA interaction signatures. Nucleic Acids Research Genomics and Bioinformatics, 2019; 1; 1: e2 DOI: 10.1093/nargab/lqz002.

2019

Original articles in indexed journals - Evolutionary Genomics

​Blevins WR, Carey LB, Albà MM. Transcriptomics data of 11 species of yeast identically grown in rich media and oxidative stress conditions. BMC Res Notes​,​ 2019; 12 (1): 250. PMID: 31053168 . DOI: 10.1186/ s13104-019-4286-0.

2019

Original articles in indexed journals - Evolutionary Genomics

Blevins WR, Tavella T, Moro SG, Blasco-Moreno B, Closa-Mosquera A, Díez J, Carey LB, Albà MM. Extensive post-transcriptional buffering of gene expression in the response to oxidative stress in baker's yeast. Sci Rep, 2019; 9: 11005 . PMID: 31358845 . DOI: 10.1101/501478.

2019

Original articles in indexed journals - Evolutionary Genomics

Ruiz-Orera J, Alba MM. Translation of Small Open Reading Frames: Roles in Regulation and Evolutionary Innovation. Trends Genet, 2018; 35(3): 186-198. PMID: 30606460 . DOI: 10.1016/j.tig.2018.12.003.

2018

Original articles in indexed journals - Evolutionary Genomics

Ruiz-Orera J, Verdaguer-Grau P, Villanueva-Cañas JL, Messeguer X, Alba MM. Translation of neutrally evolving peptides provides a basis for de novo gene evolution. Nat Ecol Evol, 2018; 2(5): 890-896. PMID: 29556078 . DOI: 10.1038/s41559-018-0506-6.

2018

Original articles in indexed journals - Evolutionary Genomics

Faherty SL, Villanueva-Cañas JL, Blanco MB, Albà MM, Yoder AD. Transcriptomics in the wild: hibernation physiology in free-ranging dwarf lemurs. Mol Ecol, 2018; 27(3): 709-722. PMID: 29319912 . DOI: 10.1111/mec.14483.

2018

Original articles in indexed journals - Evolutionary Genomics

Albà MM. Zinc-finger domains in metazoans: evolution gone wild. Genome Biol, 2017; 18 (1): 168. PMID: 28877710 . DOI: 10.1186/s13059-017-1307-y.

2017

Original articles in indexed journals - Evolutionary Genomics

Villanueva-Cañas JL Ruiz-Orera J, Agea MI, Gallo M, Andreu D, Alba MM. New Genes and Functional Innovation in Mammals. Genome Biol Evol, 2017; 9; 7: 1886–1900. PMID: 28854603 . DOI: 10.1093/gbe/evx136.

2017

Original articles in indexed journals - Evolutionary Genomics

Domazet-Loso T, Carvunis AR, Alba MM, Sestak MS, Bakaric R, Neme R, Tautz D. No evidence for phylostratigraphic bias impacting inferences on patterns of gene emergence and evolution. Mol Biol Evol, 2017; 34 (4): 843-856 . PMID: 28087778 . DOI: 10.1093/molbev/msw284 APR 2017.

2017